Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0912 ATGAAGAGAGGGTGGAGGGCATCGTGGTCCGAAGAGCATGGGGTTGGCCTGTTTTGCTTTCTGTTGCTGCTAATGGCGTCAGACGCCAAAGATTTGTCTGATGATGATGATGATGTGGTGGGGTTATTGGCTTTCAAGTCCTCCTCCGTCGTGTCCGATCCCACTGGGTTCTTGAGTGATTGGAGTCATGATTCTCCCCGTCCCTGCGCGTGGAGGGGCGTCTCGTGCTCCTCCAGTGGCCGGGTGGTTGCGCTCGACCTCACCAACGCTGGCCTGGTTGGTTCTCTCCAGCTTTCTCGACTTTTGGCGCTTGAAAATCTTCGACACGTCCATTTTCACGGCAATCACTTCTCGGAGGGCGACCTCTCCCGGTCCTACAGGGGCTCTTGCAAGCTTGAGACCTTAGATTTGTCCGCTAACAACTTGACGCTTCCGCTTGCAGGACCACCTCTCCTGTTGGGTTGCCAACGCCTTGCTTCCCTCAACCTCTCCCGCAATTTTATCCCCGGAGGCAGTCTCGCCTTCGGCCCTTCTCTGCTCCAGCTCGACCTTTCCCGCAATAAAATTTCTGATTCAGCTTTCGTCGACCACTTTCTCTCCAACTGTCAGAATTTGAATCTTTTCAATCTCTCCGATAATAAGCTTGCTGCCAAACTGAGCGCCTCCTCTCTCTCTCCCTGCAAAAACCTCTCCACCCTTGACCTCTCTTACAATCTCTTGTCTGGGGAGATGCCCGTGGGCCATTCATCACCCCCGTCTCTGAGGCTTCTGGATCTCTCTCACAACAACTTCTCTGCTAAATTATCCAGCATTGAGTTTGGGGAATGTGGGAATCTTACTGTGCTCGATCTGTCCCACAATGATTTCTCTGGCACCGACTTCCCACCCAGCCTGAGAAATTGCGAGCTTCTTGAGACGCTTGACCTTTCTCATAATGTGCTAGAGTACAAGATCCCAGGGGACTTGTTGGGGAACCTCAGGAATTTGCGGTGGTTGTCGCTGGCCCATAATCGTTTCATGGGTGAGATTCCCCCAGAACTGGCTGCAACTTGTGGGACTCTGCAGGGGCTGGACCTTTCTGCAAACAACCTTTCTGGTGGGTTCCCTTTGACTTTTGCATCCTGCTCGTCTCTGGTTAGCCTCAACCTGGGCAACAATAGGCTGTCCGGGGATTTCCTTACCATGGTCATCAGTACTCTCCCCAGTTTAAAATATCTCTATGTCCCCTTCAACAACCTAACTGGTTCTGTACCCCTGTCCCTGACGAACTGCACTCAATTGCAAGTGCTTGATCTCAGTTCTAATGCCTTCACGGGGACCTTTCCTCCTGGCTTCTGCTCTGATGCATCCCAGTCAGTCCTTGAGAAGATTCTCTTGGCCGACAATTTCCTCTCAGGGACAGTTCCCTTGGAGCTCGGAAACTGCCAGAAACTGAGGTCAATTGATCTTAGCTTCAACAACTTGAGTGGCCCAATTCCTTATGAAATTTGGACCCTACCAAATCTTTCTGATCTGGTTATGTGGGCAAACAACCTCACTGGTGAAATCCCAGAAGGCATTTGCATTAAGGGAGGAAATTTAGAGACCCTGATTCTCAACAACAATCGGATAAATGGAACTATTCCACTCTCCCTTGCCAACTGCACAAATTTGATATGGGTTTCACTTGCCAGCAACCAGCTTACCGGAGAAATCCCTGCTGGTATTGGAAATCTCCATAACCTTGCTGTCCTCCAATTGGGTAACAATACACTTAATGGACGGATCCCCTCAGAGCTTGGAAAGTGCCAAAATCTCATTTGGCTCGATTTAAACAGCAATGGTTTTAGTGGTTCAGTACCATCTGAGCTCGCCAGTGAAGCTGGCCTAGTCACGCCTGGACTTGTTTCAGGGAAGCAGTTTGCATTCGTGAGAAATGAGGGTGGGACAGCTTGCAGAGGTGCTGGAGGACTTGTTGAATTTGAGGGCATCCGGTCGGAGAGACTGGCAAGTTTTCCTATGGTTCACTCTTGCCCATCAACCAGAATCTACTCTGGTGTAACGGTTTACACGTTTTCGAGCAATGGCAGCATGATCTACCTTGATCTCTCCTACAATTCCTTGTCGGGAACTATACCTCAAAGTTTTGGTTCTTTAAACTATTTGCAGGTCTTGAATTTGGGACACAACCAGCTAACTGGAAATATACCTGACAGCCTGGGAGGTTTGAAGGCAATTGGAGTCTTGGATCTCTCTCATAATAACCTTCAAGGATACATCCCCGGAGCACTAGGGTCTCTCTCATTTCTCAGTGATCTTGATGTGTCGAACAACAACCTCACTGGTCCAATCCCTTCTGGAGGGCAGTTGACCACTTTCCCAGCCTCCAGATATGATAACAATTCTGGCCTTTGCGGAGTTCCTTTACCCCCTTGTGGCTCTGATGCTGGAGATCACCCCCAGGCAAGCTCTTATAGTCGAAAAAGGAAACAGCAGGCTGTGGCTGCAGAAATGGTCATTGGCATCACCGTCTCACTTTTCTGTATCTTTGGCCTTACATTGGCTCTTTACAGGATGAGGAAGAACCAGCGGACGGAGGAACAGAGAGATAAATATATTGAAAGTCTTCCAACTTCTGGTAGCAGCAGCTGGAAACTTTCTAGTGTTCCTGAGCCTCTGAGCATCAATGTTGCCACATTTGAAAAACCTCTGAGGAAGCTGACTTTTGCCCATCTCCTTGAAGCTACCAATGGCTTCAGTGCTGAAAGTTTAATTGGATCTGGAGGGTTTGGTGAGGTCTACAAGGCCCAACTGAGAGATGGATGTGTTGTTGCGATCAAGAAGCTTATTCATGTCACAGGACAGGGAGACAGAGAATTTATGGCAGAAATGGAAACCATTGGAAAGGTAAAGCATCGGAACCTAGTTCCTTTGTTGGGTTACTGCAAAATTGGGGAGGAGAGGCTTCTTGTATATGAGTACATGAAATGGGGGAGTTTGGAGGCTGTTCTTCATGATAGGGCCAAAGGAGGGGTCTCCAATCTTGACTGGGCAGCAAGAAAGAAGATTGCCATTGGGTCAGCAAGAGGTCTTGCATTCCTTCATCACAGCTGCATACCTCACATTATCCACCGAGACATGAAGTCTAGCAATGTTCTTCTAGATGAAAACTTTGAGGCCAGGGTGTCTGATTTTGGCATGGCAAGATTGGTGAATGCCCTAGACACTCATCTCAGTGTGAGCACCCTTGCAGGGACTCCGGGGTATGTTCCACCAGAATACTACCAGAGTTTCAGGTGCACAACAAAAGGGGATGTATACAGCTACGGTGTTGTTTTGCTGGAGCTTCTCTCAGGCAAGAGGCCAATAGATTCATTGGAGTTTGGTGATGACAACAACCTTGTTGGGTGGGCAAAGCAGCTTCAAAGGGAAAAAAGAAGCAATGAGATATTGGACCCTGAGTTGATGACGCAGAAATCTGGGGAGGCTGAACTGTTCCAGTACCTAAATATTGCCTTTGAGTGCCTAGACGACAGGCCGTTCCGACGGCCAACCATGATTCAGGTGATGGCGATGTTTAAAGAGCTTCATGTTGATACAGAAAGTGATATCCTAGATGGTTTCTCACTGAAAGACACGGTTGTTGAGGAATTATGA 3636 0.4854 MKRGWRASWSEEHGVGLFCFLLLLMASDAKDLSDDDDDVVGLLAFKSSSVVSDPTGFLSDWSHDSPRPCAWRGVSCSSSGRVVALDLTNAGLVGSLQLSRLLALENLRHVHFHGNHFSEGDLSRSYRGSCKLETLDLSANNLTLPLAGPPLLLGCQRLASLNLSRNFIPGGSLAFGPSLLQLDLSRNKISDSAFVDHFLSNCQNLNLFNLSDNKLAAKLSASSLSPCKNLSTLDLSYNLLSGEMPVGHSSPPSLRLLDLSHNNFSAKLSSIEFGECGNLTVLDLSHNDFSGTDFPPSLRNCELLETLDLSHNVLEYKIPGDLLGNLRNLRWLSLAHNRFMGEIPPELAATCGTLQGLDLSANNLSGGFPLTFASCSSLVSLNLGNNRLSGDFLTMVISTLPSLKYLYVPFNNLTGSVPLSLTNCTQLQVLDLSSNAFTGTFPPGFCSDASQSVLEKILLADNFLSGTVPLELGNCQKLRSIDLSFNNLSGPIPYEIWTLPNLSDLVMWANNLTGEIPEGICIKGGNLETLILNNNRINGTIPLSLANCTNLIWVSLASNQLTGEIPAGIGNLHNLAVLQLGNNTLNGRIPSELGKCQNLIWLDLNSNGFSGSVPSELASEAGLVTPGLVSGKQFAFVRNEGGTACRGAGGLVEFEGIRSERLASFPMVHSCPSTRIYSGVTVYTFSSNGSMIYLDLSYNSLSGTIPQSFGSLNYLQVLNLGHNQLTGNIPDSLGGLKAIGVLDLSHNNLQGYIPGALGSLSFLSDLDVSNNNLTGPIPSGGQLTTFPASRYDNNSGLCGVPLPPCGSDAGDHPQASSYSRKRKQQAVAAEMVIGITVSLFCIFGLTLALYRMRKNQRTEEQRDKYIESLPTSGSSSWKLSSVPEPLSINVATFEKPLRKLTFAHLLEATNGFSAESLIGSGGFGEVYKAQLRDGCVVAIKKLIHVTGQGDREFMAEMETIGKVKHRNLVPLLGYCKIGEERLLVYEYMKWGSLEAVLHDRAKGGVSNLDWAARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNVLLDENFEARVSDFGMARLVNALDTHLSVSTLAGTPGYVPPEYYQSFRCTTKGDVYSYGVVLLELLSGKRPIDSLEFGDDNNLVGWAKQLQREKRSNEILDPELMTQKSGEAELFQYLNIAFECLDDRPFRRPTMIQVMAMFKELHVDTESDILDGFSLKDTVVEEL* 1212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0912 1211 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 249 450 - -
Vvi19g0912 1211 Pfam Brassinosteroid receptor island domain 622 686 IPR045381 -
Vvi19g0912 1211 FunFam Serine/threonine-protein kinase BRI1-like 1 629 686 - -
Vvi19g0912 1211 Pfam Leucine Rich Repeat 693 712 IPR001611 GO:0005515
Vvi19g0912 1211 Pfam Leucine rich repeat N-terminal domain 36 77 IPR013210 -
Vvi19g0912 1211 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 354 1188 - -
Vvi19g0912 1211 SMART LRR_typ_2 712 735 IPR003591 -
Vvi19g0912 1211 SMART LRR_typ_2 760 783 IPR003591 -
Vvi19g0912 1211 SMART LRR_typ_2 572 596 IPR003591 -
Vvi19g0912 1211 SMART LRR_typ_2 499 523 IPR003591 -
Vvi19g0912 1211 SMART LRR_typ_2 400 423 IPR003591 -
Vvi19g0912 1211 SMART LRR_typ_2 276 301 IPR003591 -
Vvi19g0912 1211 SMART LRR_typ_2 736 759 IPR003591 -
Vvi19g0912 1211 SMART LRR_typ_2 326 350 IPR003591 -
Vvi19g0912 1211 SMART LRR_typ_2 424 448 IPR003591 -
Vvi19g0912 1211 SUPERFAMILY L domain-like 38 319 - -
Vvi19g0912 1211 ProSitePatterns Protein kinases ATP-binding region signature. 918 941 IPR017441 GO:0005524
Vvi19g0912 1211 Gene3D Ribonuclease Inhibitor 177 806 IPR032675 -
Vvi19g0912 1211 Gene3D Ribonuclease Inhibitor 38 152 IPR032675 -
Vvi19g0912 1211 Gene3D Phosphorylase Kinase; domain 1 874 987 - -
Vvi19g0912 1211 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1035 1047 IPR008271 GO:0004672|GO:0006468
Vvi19g0912 1211 ProSiteProfiles Protein kinase domain profile. 912 1193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0912 1211 Pfam Protein kinase domain 914 1184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0912 1211 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 451 628 - -
Vvi19g0912 1211 Gene3D - 629 686 - -
Vvi19g0912 1211 Gene3D Transferase(Phosphotransferase) domain 1 988 1202 - -
Vvi19g0912 1211 FunFam serine/threonine-protein kinase BRI1-like 2 873 987 - -
Vvi19g0912 1211 SUPERFAMILY L domain-like 418 790 - -
Vvi19g0912 1211 SUPERFAMILY L domain-like 221 517 - -
Vvi19g0912 1211 FunFam Brassinosteroid LRR receptor kinase 988 1191 - -
Vvi19g0912 1211 Pfam Leucine rich repeat 715 773 IPR001611 GO:0005515
Vvi19g0912 1211 Pfam Leucine rich repeat 327 388 IPR001611 GO:0005515
Vvi19g0912 1211 FunFam Tyrosine-sulfated glycopeptide receptor 1 665 809 - -
Vvi19g0912 1211 SMART serkin_6 912 1186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0912 1211 SUPERFAMILY Protein kinase-like (PK-like) 893 1186 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0912 Vvi-Chr19 10676012 10679647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0912 15 1210 Receptor kinase-like Gene Family AT1G55610 65.343 0.0 1517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vvi19g0912 Pkinase 6.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0912 - - vvi:100249741 2372.04