Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0910 ATGGCGGGTATTGATGACCATGTTGCTATAATTGGAGATTGGGTGCCTCCCAGTCCAAGCCCGAGAATGTTCTTCTCAATGATGCTAGGTGATGATGTTGACTCAAGAGCAACCTCTGAACCTACCAACGAAAATAGAAATGAGGGTTTCTTTCTGGGATCTCCAGAGCAGATTATGTCTGGGGATACTGACAAAAAGACACTAGCTGGTGACTTGGGTGATCAATTGACTGAATTCGGTGCATTTTCTGATCAGAAATTAAGCTCACGGGGAGGTCTTGTGGAAAGGATAGCAGCCAGAGCTGGATTTAATGCTCCAAGGTTGAATACAGAAAGTATCAGATCTGCTGACCTGTCATTGAACCCTGATGTTCGGTCTCCTTACCTGACAATCCCTCCTGGTCTCAGTCCAACTACACTGCTAGAATCTCCAGTTTTTCTCTCGACTTCACATGCTCAACCCTCTCCAACAACGGGAAAATTCCCATTTATTCCAAATGTTAACAATAGGAGCTCCATGTTGATCCCAGCGGCCCCTGATAGGAGTAAAGAAGATCTGTTTGAGGACTTCAATACCTCATCTTTTGCATTCAAGCCTGTTGCAGAATCGGGTTCCTCCTTTTTTAATAATGGAGCCAGCAAAATATCTGCTGCGACCATTCCACAGCAATCATTTCCTAGTATTGAGGTCTCAGTTCAGTCAGAGAACTCTCTACCTTCTCAAATTATGGAACCTACCAAAGTCCACTCTCAGAGTAGGAACACATTCCATGTTCAGGCAGACTTATCCAGATCATCCACTGAAAAAGATATCCCTGCTACTATTGCTTCAGATCCAACTGTCCTTGGTACAGTTGGCAGTGCTGAACATTCTCCACCACTTGATGAGCAACAAGATGAGGATGGAGATCAAAGGGGTGGTGTAGACAACATGGTTGGTGGTGCCCCAGCCGAGGATGGATATAATTGGAGAAAATATGGACAGAAGCAAGTAAAAGGCAGCGAATTTCCACGAAGTTATTACAAGTGCACGCATCCAAATTGTCAAGTTAAGAAGAAGGTGGAACGGTCTCATGAAGGCCACATAACAGAGATCATCTACAAGGGAGCCCACAATCACTCCAAACCTCCACCCAATCGCCGATCAGCCATTGGGTCATCTAATCCACTCAGTGACATGCAGCTAGATATACCAGAACAGGCAGGGCCACATGGTGGTGATGGTGATCCAGTTTGGGCAAGCACCCAAAAGGGAACTGCTGCTGGAGCTCCTGATTGGAGGCATGATAACCTTGAGGTGACATCATCATCTTTGGGCCCTGAATTCTGCAACACGTCTACCACTTTGCAGGGTCAGAATGGTGCTCCTTTTGAATCAAGTGATGCAGTGGATGCCTCATCCACCTTTTCTAATGATGAAGATGATGATGATCGAGTGACACATGGCAGTGTATCATTGGGTTATGATGGTGAAGGAGATGAATCTGAATCAAAGAGAAGGAAAGTCGAAGCTTATGCAACAGAAATGAGTGGAGCCACCAGAGCAATTCGTGAGCCTAGAGTTGTGGTTCAGACAACCAGTGAGGTGGATATCCTTGATGATGGATATCGCTGGCGCAAGTATGGGCAGAAAGTCGTGAAAGGAAATCCGAATCCAAGGAGTTACTACAAGTGCACCAATGCAGGCTGCACAGTAAGGAAGCATGTGGAGAGGGCATCACATGACCTTAAGTCAGTTATAACCACATATGAAGGGAAGCACAATCATGATGTTCCTGCTGCTCGCAATAGCAGCCATGTCAACTCTGGTGCTTCCGGCACAGGACCTGCCCAAGCAGCAGCAGCTGCTGCTGCTGCTGCAACTGTTCAAACCCATGTTCACAGGTCAGACTCATCACAAGTTCATAACATGGCGAGGTTTGACAGGCCTCCTTCATTTGGTACATTCAACCTGCCTGGAAGGCAGCAGCTGGGGCCTTCCCATGGTTTCTCTTTCGGGATGAATCAACCAGGCCTGGCCAATCTTGGAATGGCTGGCTTGGGCCCTACCCAAGGCAAGCTGCCTGCTCTGCCGGTTCATCCATATCTGGGACAGCAACGCCAGGTGAATGAAATGGGTTTCATGTTGCCAAAAGGAGAACCAAAGGTGGAGCCCATGTCAGAACCCAGTCTAAACCTCTCCAGCGGCTCTGCTGTTTATCATCAAATTATGAGCAGGCTACCGCTTGGACCTCAGATGTAA 2241 0.4726 MAGIDDHVAIIGDWVPPSPSPRMFFSMMLGDDVDSRATSEPTNENRNEGFFLGSPEQIMSGDTDKKTLAGDLGDQLTEFGAFSDQKLSSRGGLVERIAARAGFNAPRLNTESIRSADLSLNPDVRSPYLTIPPGLSPTTLLESPVFLSTSHAQPSPTTGKFPFIPNVNNRSSMLIPAAPDRSKEDLFEDFNTSSFAFKPVAESGSSFFNNGASKISAATIPQQSFPSIEVSVQSENSLPSQIMEPTKVHSQSRNTFHVQADLSRSSTEKDIPATIASDPTVLGTVGSAEHSPPLDEQQDEDGDQRGGVDNMVGGAPAEDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHSKPPPNRRSAIGSSNPLSDMQLDIPEQAGPHGGDGDPVWASTQKGTAAGAPDWRHDNLEVTSSSLGPEFCNTSTTLQGQNGAPFESSDAVDASSTFSNDEDDDDRVTHGSVSLGYDGEGDESESKRRKVEAYATEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHVNSGASGTGPAQAAAAAAAAATVQTHVHRSDSSQVHNMARFDRPPSFGTFNLPGRQQLGPSHGFSFGMNQPGLANLGMAGLGPTQGKLPALPVHPYLGQQRQVNEMGFMLPKGEPKVEPMSEPSLNLSSGSAVYHQIMSRLPLGPQM* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0910 746 SUPERFAMILY WRKY DNA-binding domain 314 376 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi19g0910 746 Gene3D WRKY domain 307 377 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi19g0910 746 ProSiteProfiles WRKY domain profile. 527 592 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g0910 746 FunFam WRKY transcription factor 308 377 - -
Vvi19g0910 746 MobiDBLite consensus disorder prediction 368 500 - -
Vvi19g0910 746 MobiDBLite consensus disorder prediction 430 467 - -
Vvi19g0910 746 MobiDBLite consensus disorder prediction 282 321 - -
Vvi19g0910 746 SUPERFAMILY WRKY DNA-binding domain 524 592 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi19g0910 746 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 141 620 IPR044810 GO:0003700
Vvi19g0910 746 MobiDBLite consensus disorder prediction 33 66 - -
Vvi19g0910 746 Pfam WRKY DNA -binding domain 318 373 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g0910 746 Pfam WRKY DNA -binding domain 533 589 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g0910 746 MobiDBLite consensus disorder prediction 594 608 - -
Vvi19g0910 746 ProSiteProfiles WRKY domain profile. 318 376 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g0910 746 MobiDBLite consensus disorder prediction 379 394 - -
Vvi19g0910 746 Gene3D WRKY domain 519 585 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi19g0910 746 MobiDBLite consensus disorder prediction 586 608 - -
Vvi19g0910 746 FunFam WRKY transcription factor 33 519 585 - -
Vvi19g0910 746 SMART WRKY_cls 532 591 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g0910 746 SMART WRKY_cls 317 375 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0910 Vvi-Chr19 10665195 10669055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0910 1 741 WRKY Transcription Factor Family AT5G56270 50.978 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi19g0910 WRKY 3.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0910 K18835 - vvi:100261730 1486.09