Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0908 ATGGAAATGTCGGGAGGGGAATTGAGCGATCAGAGTCATCTCCTGAGATCGAACGGAGAAGGGGACGTGGAAGTTGGAGGAGGAGGAGGGGGCAACAGCAAGAGTAAAGGCATTAAGGATCTACTGAAGCATCACCTGGATCGAGGATTCTCCGGACGCCGTCTCAGCTTCAAGCGATTGGAGAGTAATAGGGAGAGAGACCTCCACAACCATCACCATTCCTCTTTTGATCACGCCGACCTCGGCGATGCCCTCGGCGACAGCGCCCCTCCCGAATGGGCTTTGCTCCTTATTGGCTGTCTTCTCGGCCTCGCCACCGGTCTTTGTGTTGCAGCCTTCAATCGTGGGGTGCATGTAATACATGAATGGGCTTGGGCTGGAACTCCAAATGAGGGTGCTGCTTGGCTCCGGTTACAAAGACTAGCTGATACTTGGCATCGGATACTTTTAATACCTGTCACAGGAGGAGTTGTTGTTGGCATGATGCATGGTTTACTTGAAATATTAGACCAAATAAAGCAGTCCAGTTCTTCTCAAAGGCAAGGTTTTGATTTGCTTGCTGCTGTCTCCCCAACAATCAAGGCCATCCAAGCTGCTGTGACCTTAGGCACTGGTTGTTCCTTGGGTCCTGAAGGCCCTAGTGTAGATATTGGTAAATCATGTGCAAATGGATTCTCAGTAATGATGGAAAACAATAGAGAACGAAAGATAGCTCTCGTTGCCGCCGGGGCCGCAGCTGGCATTGCTTCAGGTTTTAACGCAGCTGTTGCTGGTTGTTTCTTTGCCATTGAAACGGTGTTAAGGCCTCTTCGTGCAGAAAACTCACCTCCTTTCACAACTGCAATGATAATATTGGCCTCTGTTATTTCATCTACTGTGTCCAATGTTTTACTTGGGGAGAAACCAGCTTTTACAGTGCCTGTGTATGAACTGAAATCTGCAGCTGAATTACCTTTGTACCTGATATTAGGTATGCTATGTGGGGTTGTTAGTGTAGCATTCACCCGCTTGGTCGCATGGTACTCTAAATCATTTGAACTTATCAAAGAAAAATTTGGCCTTCCTGCTGTTGTATGCCCTGCTCTAGGTGGCTTGGGAGCTGGGATAATAGCTCTTAAGTATCCTGGAATACTTTACTGGGGTTTCACAAATGTTGAAGAAATTCTACATACTGGGAAGAGTGCTTCAGCACCTGGAATCGGACTATTAGCTCAACTAGCAGCAGCCAAAGTTGTGGCAACAGCTCTGTGCAAGGGATCTGGGCTTGTAGGTGGCCTCTACGCTCCGAGTTTGATGATTGGTGCTGCTGTTGGTGCGGTCTTTGGGGGTTCAGCAGCAGAACTTATCAATTCAGCTATTCCGGGAAATGCTGCTGTTGCGCAGCCACAGGCATATGCATTGGTTGGGATGGCTGCTACATTAGCTTCAGTTTGTTCTGTACCCTTGACATCAGTTCTACTTCTGTTTGAGCTGACAAAAGATTATAGGATATTGCTTCCTCTCATGGGAGCTGTTGGATTAGCAATTTGGGTTCCTTCTGTGGCAAACCAGGCCAAGGAGACTGAAGCATCTGATACAAGGAGTCCATCAAGAGGTTATTCCTTTGTTACGCCTGTTGAAGATAAAAATGAGGGCATTTGGAGACAAACTGGTGATGGAGATAGTCTAGAACTCTCTGTTATAGGAAATTCCTCTGACAATGAAGCAATTAATGATGATGTACTTCTGGAAGATTTGAAGGTTTCCCAAGCCATGTCAAAGAACTTTGTGAAGGTTTCATCAACCATGACCTTGAAAGAAGCAACAAAATGTATGCATGACCGGCAGCAGAATTGTGTGCTTGTGGTTGATGCTGAAGATTTTCTGGAGGGAATCCTAACTTATGGTGACATTAAACGTTATCTGTCCAAGAAGTCCAAGGAGGCTCCTAAGGGTGATTCATCACTTCCTGATGTAAATGCAAGTCTTGTTTCCTCTGTGTGTACTCGAGGGATGAGCTACCGTGGGCGAGCCCGTGGACTTTTAACTTGTTATCCAGACACTGACTTAGCAAGTGCAAAGGAGCTAATGGAAGCTAAGGGAATCAAGCAGTTGCCAGTGGTTAAGCGTGGTGGTGAACCAAAAAAAGAAAGAAAGCGCAGCATTGTTGCTATTCTTCATTATGATTCAATATGGAACTTTCTCAGAGAGGTGATGAATGGCAGAATACCAGTCTATCAGCAGAGGAAAGAAGAGAATATTGGTGGTTAA 2250 0.4604 MEMSGGELSDQSHLLRSNGEGDVEVGGGGGGNSKSKGIKDLLKHHLDRGFSGRRLSFKRLESNRERDLHNHHHSSFDHADLGDALGDSAPPEWALLLIGCLLGLATGLCVAAFNRGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVVVGMMHGLLEILDQIKQSSSSQRQGFDLLAAVSPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSVMMENNRERKIALVAAGAAAGIASGFNAAVAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNVLLGEKPAFTVPVYELKSAAELPLYLILGMLCGVVSVAFTRLVAWYSKSFELIKEKFGLPAVVCPALGGLGAGIIALKYPGILYWGFTNVEEILHTGKSASAPGIGLLAQLAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAELINSAIPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVANQAKETEASDTRSPSRGYSFVTPVEDKNEGIWRQTGDGDSLELSVIGNSSDNEAINDDVLLEDLKVSQAMSKNFVKVSSTMTLKEATKCMHDRQQNCVLVVDAEDFLEGILTYGDIKRYLSKKSKEAPKGDSSLPDVNASLVSSVCTRGMSYRGRARGLLTCYPDTDLASAKELMEAKGIKQLPVVKRGGEPKKERKRSIVAILHYDSIWNFLREVMNGRIPVYQQRKEENIGG* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0908 749 Gene3D - 566 728 IPR046342 -
Vvi19g0908 749 MobiDBLite consensus disorder prediction 1 37 - -
Vvi19g0908 749 SUPERFAMILY CBS-domain pair 575 706 IPR046342 -
Vvi19g0908 749 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 15 740 - -
Vvi19g0908 749 Gene3D Clc chloride channel 83 527 - -
Vvi19g0908 749 SMART cbs_1 588 636 IPR000644 -
Vvi19g0908 749 SMART cbs_1 673 729 IPR000644 -
Vvi19g0908 749 SUPERFAMILY Clc chloride channel 91 514 IPR014743 -
Vvi19g0908 749 ProSiteProfiles CBS domain profile. 585 641 IPR000644 -
Vvi19g0908 749 Pfam CBS domain 673 706 IPR000644 -
Vvi19g0908 749 Pfam CBS domain 581 636 IPR000644 -
Vvi19g0908 749 CDD Voltage_gated_ClC 105 508 - -
Vvi19g0908 749 CDD CBS_pair_voltage-gated_CLC_euk_bac 585 725 - -
Vvi19g0908 749 Pfam Voltage gated chloride channel 172 511 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi19g0908 749 FunFam Chloride channel protein 83 527 - -
Vvi19g0908 749 PRINTS Chloride channel signature 463 479 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi19g0908 749 PRINTS Chloride channel signature 481 500 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi19g0908 749 PRINTS Chloride channel signature 245 264 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi19g0908 749 PRINTS Chloride channel signature 194 213 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi19g0908 749 PRINTS Chloride channel signature 422 442 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vvi19g0908 749 FunFam Chloride channel protein 566 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0908 Vvi-Chr19 10605368 10619600 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0908 - - vri:117909032 1381.7