Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0902 ATGACCCTTGACTGGGATTCTTCTTCTGGTTTCGCTTCCATGGACGATGATCAAAAGAAAGATTACTGTAAAATACTGGAAGGAGGTGGACGGGAGGATCACGTCGCTTTAGAAAAGGGCGCGCTGAAAGAGAAGCCAGCGGCGGCCAACGGAGGGCCAATGATGAAGCTCAAGCATCAGAGCTCCTGGGAGTTGAATGGGGAAGATAACGTCCGGGAACCTCGGATCTGCAGCGTCTGCAAAAGGGAGTTTAGCTCCGGTAAGGCTTTGGGGGGTCATATGAGAGTTCACATTCAGGCCAGCAAGAAAGAGGACGAGCTTGTTAACAAGAAGACCGCCAAGCTCAAGAAACAATCCGTGAATGGTCCTGGTTCCACAACGAACAATGCCGATGACACCACTTGTTCCCTTTGCGGCAAGAATTTTCCGTCTAGGAAGTCGCTCTTTGGGCACATGAGATGCCACCCCGAGAGGGAATGGAGGGGAATTCAGCCACCGCCCACCGCCAAAAACAGTTCATCTTCGACCTTGTCTGAGCTTCTTCCCCGAATAATGGATGATCAGTTTGATTCGGCTACTACTGTTACCAAGTGTGTTACTGATTTGCAGCAGTCTCTGTCAGGATCCGGATGGTCAGTCACTGATAGGAGAGGCCGGAAAAGCTTTCTTCCTGATGCTGACTCAGATGCTGATGCTGATGCAGCTTATAATCTCTTGATGCTCGGCCATGGGGATTTCCTCTATCTTGGGCACCCTCCACACTCTTATCAGCAACAGCAAAGAGTGAAGGAGGAATGTGAGAGCAATTCCCCAACTAACAAGGCCGAAATTGAGGAGAATAACCAATATTTTGAATGCACAGCTGGGTCGAAGAAGAGAGGAATTGAGGCGTCACTCTTCGGCAACATGAAGAATTCTCCGTCAAAGAAGTTGAGAATCGGAGAAAAAGGTTCCACTGAGGCTAGGAATGGTGGTGCCTTAATGTCGTTGAAAAAGATGAATGGTGGCAAAGGCAAAGGTAAGGCTGTGATGGAAACTGGTCTCTCTGTGGACCAGCCAGGGGACATGAATGGCCTGTGGGCGGAGGCTTACTGGCCTAGAGAGGAAGCTGTGGAAGAGGAATCTGATAGCAAGAACACCTATGGCAGCGCACTTGGGGATCAGCTCAACTCCAACTCAAACTCCAACCAGGAGATTAGCATGAAAACGAAGAAGAAGAAGAGGAGGAAAATGAAGCTGACAGAATTGGAAGCAACAGGAGGAGCAGCAGGAGATATTGTGCCGGTCAATCAAATTCATCAGAAGCAGGTTCCTACTACTCCTGATAGGTACAGATGCAGTACTTGCAATAAATCTTTTCCAACTCACCAGGCCTTGGGGGGTCACAGGTCCAGCCATAACAAATTTAAGAACAGTCAAACAATGGATGATTCTGCATGTGCGGATGCCCCGCCGGCTGATTATGAAAATTATGGATTTACACCCAATGTCAACCTCACCACCCAAGCTCATGAAGCTCTAGGATGCAACGATGCAGCTGCTGCCTTAGCTTCCATGCTCAGTACTACACACCAATGCAAGTGCTGCAACAAGACCTTCCCAACTGGTCAGGCTCTTGGAGGCCACATGAGGTGTCACTGGAATGGTCCATCTGAAGCTCCATCCAGCCAAGTCACATCCCCAGGAGAAGCCAGTCAGACTGGTCCTAAACTCCTCCTAGGTTTTGATCTCAACGAGCTCCCCGCCATGGACGAGGAGGATGAAGGTACTGAGTCTGTCACTCTTGCAGCTGGTGATGCATCTTCCTCTCACAATTCCGTTAACTAA 1827 0.4937 MTLDWDSSSGFASMDDDQKKDYCKILEGGGREDHVALEKGALKEKPAAANGGPMMKLKHQSSWELNGEDNVREPRICSVCKREFSSGKALGGHMRVHIQASKKEDELVNKKTAKLKKQSVNGPGSTTNNADDTTCSLCGKNFPSRKSLFGHMRCHPEREWRGIQPPPTAKNSSSSTLSELLPRIMDDQFDSATTVTKCVTDLQQSLSGSGWSVTDRRGRKSFLPDADSDADADAAYNLLMLGHGDFLYLGHPPHSYQQQQRVKEECESNSPTNKAEIEENNQYFECTAGSKKRGIEASLFGNMKNSPSKKLRIGEKGSTEARNGGALMSLKKMNGGKGKGKAVMETGLSVDQPGDMNGLWAEAYWPREEAVEEESDSKNTYGSALGDQLNSNSNSNQEISMKTKKKKRRKMKLTELEATGGAAGDIVPVNQIHQKQVPTTPDRYRCSTCNKSFPTHQALGGHRSSHNKFKNSQTMDDSACADAPPADYENYGFTPNVNLTTQAHEALGCNDAAAALASMLSTTHQCKCCNKTFPTGQALGGHMRCHWNGPSEAPSSQVTSPGEASQTGPKLLLGFDLNELPAMDEEDEGTESVTLAAGDASSSHNSVN* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0902 608 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 60 586 IPR044653 GO:0003700
Vvi19g0902 608 ProSiteProfiles Zinc finger C2H2 type domain profile. 444 471 IPR013087 -
Vvi19g0902 608 SUPERFAMILY beta-beta-alpha zinc fingers 134 466 IPR036236 -
Vvi19g0902 608 SMART c2h2final6 444 466 IPR013087 -
Vvi19g0902 608 SMART c2h2final6 75 97 IPR013087 -
Vvi19g0902 608 SMART c2h2final6 524 546 IPR013087 -
Vvi19g0902 608 SMART c2h2final6 133 155 IPR013087 -
Vvi19g0902 608 ProSitePatterns Zinc finger C2H2 type domain signature. 526 546 IPR013087 -
Vvi19g0902 608 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 160 IPR013087 -
Vvi19g0902 608 MobiDBLite consensus disorder prediction 377 399 - -
Vvi19g0902 608 SUPERFAMILY beta-beta-alpha zinc fingers 523 548 IPR036236 -
Vvi19g0902 608 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Vvi19g0902 608 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
Vvi19g0902 608 MobiDBLite consensus disorder prediction 457 478 - -
Vvi19g0902 608 MobiDBLite consensus disorder prediction 368 411 - -
Vvi19g0902 608 MobiDBLite consensus disorder prediction 550 566 - -
Vvi19g0902 608 ProSiteProfiles Zinc finger C2H2 type domain profile. 524 546 IPR013087 -
Vvi19g0902 608 Pfam C2H2-type zinc finger 443 467 - -
Vvi19g0902 608 Pfam C2H2-type zinc finger 524 547 - -
Vvi19g0902 608 Pfam C2H2-type zinc finger 134 157 - -
Vvi19g0902 608 Pfam C2H2-type zinc finger 76 97 - -
Vvi19g0902 608 MobiDBLite consensus disorder prediction 550 608 - -
Vvi19g0902 608 ProSitePatterns Zinc finger C2H2 type domain signature. 446 466 IPR013087 -
Vvi19g0902 608 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Vvi19g0902 608 Gene3D Classic Zinc Finger 73 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0902 Vvi-Chr19 10503115 10505322 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0902 76 177 C2H2 Transcription Factor Family AT2G26940 36.220 4.16e-17 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi19g0902 zf-C2H2_6 6.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0902 - - vvi:104877642 1199.88