Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0901 ATGTCGACTCATCATCATCTGAGTGAGGAGGACCCAACAACTCCCACAGTATATTCAGCGCAACAACAGCCTCAGAGTGAGGCCGCCACGCCTACACATGTCTCCGCCCACAGGCCCTATCCTGAGGCTGCTGCCCAGTACCAGGAGGTTGTTCAGAGTGCTGATCTTTTCTGGCAGACCCTCAAGGATTTTCACAGATCTTTTGGTACCAAGTTCATGGTTCCCACTACAGGAGGAAAGGCTCTAGATCTACACCGCCTTTTTGTGGAGGTTACATCTCGTGGTGGCCTAGAAAAGGTTATTCGAGATCGCAAATGGAAGGAAGTGACTACAGTTTTCAAATTCCCAACAACAATCACCAGTGCATCATTTGTTTTACGGAAGTACTATTTGTCATTACTTCATCACTATGAGCAAGTTTATTACTTCCGCAAGCAATCCTTTCCAATCTCAATGGCTGATCCTCTAAACAGCAGCCCCATCAATGGGTCAGCTACTACACCTGTTTTTCAGGACAGTGCCACTACGAATGATTTGCCAGTGAGCCCTAGATTGCAGCCTGGCTGTTTGGTGACTGGAACTATAGATGGAAAATTTGATAACGGATATCTAGTTTCTGTGAATTTGGGTTCTGATGTGCTGAAAGGTGTCCTGTATCATATTCCTAATAATGAGTCACACATGTCTCGGAGTTCTAACGCTTCAGCTGTACCTCCTCCCCGTAACTGGAAGAGATCCCAGCTGGCACTACGGGATCCCTCTCGGCCCAAGCGAAGCCAGAGTGGTTACAACTTCTTCTTTGCAGAGAACTATGCCAGGTTGAAGCCTTTGTACTCTGGTCAAGAGAGGGCCATCAGTAAGAAGATTGGTTTCCTATGGAACAGACTCACAGATGCTGAAAAACAGGTCTATCAAGAAAAAGGCATGATAGACAAGGAGAGATACAAGACTGAAATGTTGGAGTACAGATCCGCATATGATTCAAAACCTCAATAG 996 0.4608 MSTHHHLSEEDPTTPTVYSAQQQPQSEAATPTHVSAHRPYPEAAAQYQEVVQSADLFWQTLKDFHRSFGTKFMVPTTGGKALDLHRLFVEVTSRGGLEKVIRDRKWKEVTTVFKFPTTITSASFVLRKYYLSLLHHYEQVYYFRKQSFPISMADPLNSSPINGSATTPVFQDSATTNDLPVSPRLQPGCLVTGTIDGKFDNGYLVSVNLGSDVLKGVLYHIPNNESHMSRSSNASAVPPPRNWKRSQLALRDPSRPKRSQSGYNFFFAENYARLKPLYSGQERAISKKIGFLWNRLTDAEKQVYQEKGMIDKERYKTEMLEYRSAYDSKPQ* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0901 331 Gene3D High mobility group box domain 242 330 IPR036910 -
Vvi19g0901 331 Pfam ARID/BRIGHT DNA binding domain 55 138 IPR001606 GO:0003677
Vvi19g0901 331 SUPERFAMILY HMG-box 249 325 IPR036910 -
Vvi19g0901 331 CDD HMG-box_AtHMGB9-like 256 322 - -
Vvi19g0901 331 MobiDBLite consensus disorder prediction 12 32 - -
Vvi19g0901 331 SMART hmgende2 255 324 IPR009071 -
Vvi19g0901 331 SMART ARID_2 48 138 - -
Vvi19g0901 331 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 256 323 IPR009071 -
Vvi19g0901 331 SMART bright_3 52 143 IPR001606 GO:0003677
Vvi19g0901 331 SUPERFAMILY ARID-like 49 152 IPR036431 GO:0003677
Vvi19g0901 331 Pfam HMG (high mobility group) box 256 323 IPR009071 -
Vvi19g0901 331 Gene3D - 39 153 IPR036431 GO:0003677
Vvi19g0901 331 ProSiteProfiles ARID domain profile. 51 142 IPR001606 GO:0003677
Vvi19g0901 331 FunFam High mobility group B protein 15 45 158 - -
Vvi19g0901 331 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 25 328 - -
Vvi19g0901 331 CDD ARID_HMGB9-like 55 138 IPR045303 GO:0003677
Vvi19g0901 331 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0901 Vvi-Chr19 10490426 10497818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0901 32 328 ARID Transcription Factor Family AT3G13350 49.677 6.00e-95 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vvi19g0901 ARID 3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0901 - - vvi:100244598 676.781