Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0899 ATGTCCCATCACCAAGGAGATTACATGGCAGATGAATACAAAATGGAAGATGTAGATGATTTGGATGAAGAGTTCCATGACAGAGAGATGGGCGGCCCAGAGTCTGAGAATAGTAAAACGGCAGATACATGCTCTGCTCAAGCCAGGAGAGGAAAAGACATACAAGGAATTCCTTGGGAAAGGCTTACCATCACTAGAGAGAAGTACAGGCAAACTAGGGTAGAACAATACAAAAACTATGAAAACATTCCTCGATCTGGAGATGGTTCAGCAAAGGAATGCAAAGTTACCAAGAAAGGGGGATTGTTTTATGAGTTCAAACACAATGCAAGATCTGTGAAATCAACAATTCTTCATTTCCAGTTGAGGAACTTAGTCTGGGCTACATCAAAACATGATGTATATCTTATGTCGCATTTCTCTGTCATTCATTGGTCTTCATTGACTTGCAACATGTCTGAAGTTCTCAATGTTTCAGGGCATGTGGCACCATGTGAGAAACACCCTGGGAGTCTGTTGGAAGGATTTACACAGACGCAAGTTAGTACGCTTGCAGTAAAAGATAAGTTGCTAGTTGCTGGAGGGTTTCAGGGAGAACTTATTTGCAAGTATCTAGATCGACCTGGAGTTAGTTTCTGTTCCAGGATAACTTATGACGATAATGCAATCACCAATGCTATTGAGATTTATGCCAGTTCCAGTGGTGCAGTTCACTTCATTGCCTCAAGTAATGACTGTGGAGTTAGAGACTTTGATATGGAAGATTTTCAACTTTCTAAGCACTTTCATTTTCCTTGGCCAGTGAATCATACTTCCCTGAGCCCTGATGGTAAGCTTCTTATAATTGTTGGGGACAATCCGAATGGAATGTTAGTGGACTCCAAAACTGGAAAGACAGTCATGCCATTGTGTGGGCACTTGGATTATTCATTTGCATCGGCATGGAACCCTGATGGTGTAACTTTTGCCACTGGGAACCAGGACAAAACCTGCCGAATTTGGGATGCCCGATATCTATCCAAGTCGGTTGCTGTTCTGAAGGGCAACCTTGGAGCCATACGCTCAATCCGCTACACCTCAGATGGTCGGTTCATGGCAATGGCAGAGCCTGCAGACTTTGTGCATGTGTATGATGTGAAAAATGGATATGAGAAGAAGCAGGAAATCGATTTCTTTGGTGAGGTTTCAGGCATATGTTTCAGCCCAGATACAGAATCGCTTTTCATTGGAGTGTGGGATCGTACATATGGTAGCCTAATGGAGTACAACAGATGTAGGAATTACGCGTACCTTGATTCCCTGATTTGA 1308 0.4289 MSHHQGDYMADEYKMEDVDDLDEEFHDREMGGPESENSKTADTCSAQARRGKDIQGIPWERLTITREKYRQTRVEQYKNYENIPRSGDGSAKECKVTKKGGLFYEFKHNARSVKSTILHFQLRNLVWATSKHDVYLMSHFSVIHWSSLTCNMSEVLNVSGHVAPCEKHPGSLLEGFTQTQVSTLAVKDKLLVAGGFQGELICKYLDRPGVSFCSRITYDDNAITNAIEIYASSSGAVHFIASSNDCGVRDFDMEDFQLSKHFHFPWPVNHTSLSPDGKLLIIVGDNPNGMLVDSKTGKTVMPLCGHLDYSFASAWNPDGVTFATGNQDKTCRIWDARYLSKSVAVLKGNLGAIRSIRYTSDGRFMAMAEPADFVHVYDVKNGYEKKQEIDFFGEVSGICFSPDTESLFIGVWDRTYGSLMEYNRCRNYAYLDSLI* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0899 435 SUPERFAMILY WD40 repeat-like 169 415 IPR036322 GO:0005515
Vvi19g0899 435 MobiDBLite consensus disorder prediction 1 47 - -
Vvi19g0899 435 ProSiteProfiles Trp-Asp (WD) repeats profile. 303 335 IPR001680 GO:0005515
Vvi19g0899 435 FunFam WD-40 repeat family protein 216 432 - -
Vvi19g0899 435 SMART WD40_4 255 293 IPR001680 GO:0005515
Vvi19g0899 435 SMART WD40_4 296 335 IPR001680 GO:0005515
Vvi19g0899 435 SMART WD40_4 339 378 IPR001680 GO:0005515
Vvi19g0899 435 SMART WD40_4 382 423 IPR001680 GO:0005515
Vvi19g0899 435 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 303 335 - -
Vvi19g0899 435 Pfam WD domain, G-beta repeat 299 335 IPR001680 GO:0005515
Vvi19g0899 435 Gene3D - 215 430 IPR015943 GO:0005515
Vvi19g0899 435 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 5 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0899 Vvi-Chr19 10456601 10463224 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0899 291 415 Miscellaneous Gene Families AT5G08390 28.000 1.45e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0899 - - vvi:100249746 898.271