Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0897 ATGGGTTCTAAATCAGTTGTGGATTTAATAGAGGCTTCATCAGGAGTTCATTATTCTGGATTTCACCTAGACGGTTTGGAACCGCGAAATACAGAGGTGGAGCAACCATCAACCTCAGCCGCTGAAAGTGTACATAAACAACCCTTTGTCATTGGTGTTGCTGGGGGTGCAGCTTCTGGGAAAACTACAGTTTGTGACATGATTATTGAGCAGCTGCATGATCAGCGTGTTGTACTAGTAAACCAGGATTCCTTTTATAACAATTTGACTGAAGAGGAACTTGCACGAGTTCATGAATACAACTTTGACCATCCTGATGCATTTGACACTGAGCAACTATTATGCGCCATGGAGAAGTTGAAGCATGGGCAAGCAGTAGATATTCCAAAATATGACTTCAAGAGTTACAAAAACAATGTGTTTCCAGCGAGAAGGGTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAGATGCTGATGTACGGCTGGCAAGGAGAATTAGGCGTGATACAGTTGAGAAGGGTAGAGATATTGGTATGGTACTTGATCAGTACTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATACTTCCAACAAAGAAGTATGCAGATATCATTATTCCCCGTGGAGGAGACAATCATGTAGCCATTGATTTGATTGTGCAACATATTCGTACAAAACTTGGACAACATGATCTTTGTAAAATATATCCTAATCTTTATGTCATTCAATCAACTTTTCAGATACGGGGTATGCATACACTTATACGTGATGCTCAAACAACAAAGCATGATTTTGTCTTTTATGCTGACCGGTTGATTCGTTTGGTTGTTGAACATGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTGAGTCTGTATATTCTGGCGTGGATTTCTGCAAGAGATTATGCGGTGTCTCTGTTATCAGAAGTGGTGAGAGTATGGAGAATGCTTTGCGAGCATGTTGCAAAGGTATCAAAATTGGGAAGATTCTTATCCATAGGGAAGGGGATAACGGTCAGCAGCTAATCTATGAAAAACTTCCAAAAGATATCTCAGACAGGCATGTGTTACTCTTGGATCCTGTCCTAGGCACAGGGAATTCAGCTGTTCAAGCTATTTCTTTACTGATACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCTGCACCTCAGGGAGTGCATGTGGTCTGCAAAAGCTTCCCGAGGATAAAGATTGTAACATCTGAGATTGATGTTGGTCTGAATGAAGATTTCCGTGTCATACCTGGCATGGGTGAGTTTGGAGACCGATATTTTGGTACAGATGACGACGACCAGCAACTGGTGGCCCCTCCACTATAG 1440 0.4139 MGSKSVVDLIEASSGVHYSGFHLDGLEPRNTEVEQPSTSAAESVHKQPFVIGVAGGAASGKTTVCDMIIEQLHDQRVVLVNQDSFYNNLTEEELARVHEYNFDHPDAFDTEQLLCAMEKLKHGQAVDIPKYDFKSYKNNVFPARRVNPSDVIILEGILIFHDLRVRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIGMVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAQTTKHDFVFYADRLIRLVVEHGLGHLPFTEKQVITPTESVYSGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPKDISDRHVLLLDPVLGTGNSAVQAISLLIQKGVPESNIIFLNLISAPQGVHVVCKSFPRIKIVTSEIDVGLNEDFRVIPGMGEFGDRYFGTDDDDQQLVAPPL* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0897 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 241 IPR027417 -
Vvi19g0897 479 Pfam Phosphoribulokinase / Uridine kinase family 50 236 IPR006083 GO:0005524|GO:0016301
Vvi19g0897 479 FunFam Uridine kinase 252 467 - -
Vvi19g0897 479 Pfam Uracil phosphoribosyltransferase 266 467 - -
Vvi19g0897 479 Gene3D - 252 467 IPR029057 -
Vvi19g0897 479 SUPERFAMILY PRTase-like 251 468 IPR029057 -
Vvi19g0897 479 NCBIfam uridine kinase 47 248 IPR000764 -
Vvi19g0897 479 CDD UMPK 50 248 IPR000764 -
Vvi19g0897 479 PRINTS Uridine kinase signature 180 190 - -
Vvi19g0897 479 PRINTS Uridine kinase signature 48 65 - -
Vvi19g0897 479 PRINTS Uridine kinase signature 216 229 - -
Vvi19g0897 479 PRINTS Uridine kinase signature 123 138 - -
Vvi19g0897 479 PRINTS Uridine kinase signature 78 89 - -
Vvi19g0897 479 PRINTS Uridine kinase signature 194 205 - -
Vvi19g0897 479 FunFam Uridine kinase 45 251 - -
Vvi19g0897 479 PANTHER URIDINE KINASE 41 378 - -
Vvi19g0897 479 CDD PRTases_typeI 325 440 IPR000836 -
Vvi19g0897 479 Gene3D - 44 251 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0897 Vvi-Chr19 10402691 10418518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0897 1 470 PRT Gene Family AT4G26510 86.076 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0897 K00876 - vvi:100259975 952.97