Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0875 ATGGCAGAAATAGCAGTTTCAGCAGCACTTGGTGTTGTGCAGATCTTCCTCAGTCAAAGAATCCCAGAGCTGAAGCAAAAAGAAGTTGATATCGGCGTTATCAAAGGACATTTGGAAACCATGCGAGCCTACCTCAAGGACATTAAGAAACGAGAACACACTGAAGGTGCTAGAGATCGAAGAAACAAAGTACAGGAGATTGCATACAAGATTGAGGATGCTCTTGAAGAGTTCATGGTTGATGTGCCAGAACACTTCCATAAGCACAAATTCTCCCAAGCTCTTCATGACGTTTACCACAAAGTCATGGACTGGAGAGCATTCCCTAGATTGTCCTCCCGTATAAATGATATTCAAGACAAGATCAGAGATATCAAAGAGTTAGATTCATTTCGCACATCTTCCTCTGGAGTAGCCTCAAGTTCCCGTGCTGAAGGAGTCCCTGACCTGGCTTATCCTATCCTCAAAAATGATGAGCTCGTGGGCATCGAGAGGCGTACATCTGATCTTCTTGATCGTCTTATGAAGGAAGCATCAAAGCGTCTGGTGATTTCTGTAGTTGGAGCCAGTGGCTCTGGTAAGACCATTCTGATAAAAAAAGTTTGTGAGAGTGAAGGGGTGAAGGGCCATTTTGAATGTCATGCTTGGGTTTCTCATTCAACCTCCTGCAAAGACACCTGCGAGAAAATTTGCAAAGAAATGGGAGTACCGGTTCCCCCAGGAGGAAAAATAGAAGAGAATTTGGTCAACTACTTGGAAGATAAAAGGTATCTCGTGGTTTTGGATGGAGGTTGGAAAGAAGATTGGTGCAACTGCATTAATATATTACCCGACAATGGCAATGGCAGTAGAGTAATCTTCTCCACATGCAGGCTTGATTTAGTTTCTAAATGTTCAGATGATTTCTACAATCTAGATCCATTATCAGGCAACGAGGCTTGGGAGCTCTTCTGTAAGAAGGCCTTCAGTGGCAGTGAATGTCCTAAGCACTTAAAAGAGATATCTGAAGATCTCTTGAGCAATTGTGGAGGGCTGCCACTTGCAATAGTGGCCTTGGGCAGTCTATTATCAACTAAAAGCCGAACACCAGCAGAGTTCCAGAAAGTGCTCGACAGCCTAGGACATAATCTGGAAAGAAATTTCGAATTTGGGATCATGAAGAGAGTATTGGAGCAAAGATATTTCAATCTCTCCCACAATCTTAAGCGCTGTTTCTTGTACTTTTGCAATTTTCCTGGGGGTTATCCTGTTACACGTGGGAGACTGATTCGGTTGTGGATAGCTGAAGGATTTGTTGAGGAGAAAGGAGACCAAGCACTGGAGGTGGCAGATGCGTACCTCAAAGAGCTCATCAGTGGATGCTTGGTCGACACAAACACATGGGATGTCCAAGGCCTGGTAAGAAGTTGTCAAGTTAATAATCTTGTGAGAGAATGCCTTGTTTCAATATCTGAAGATGAAAGATTCTGTAAAGTTTTGACCAGACAAAACTTTGATGAATATGATCACCGTAGCAATCGCCATATAGCAATCCATGATGCTTTCACCGATTCGTTGCAAAGCAAGGATTTCTCTCATGTTCGCACCTTATTCATGTTTGGAAAAGAGAATTTTACTGCTTCCGTATTTGGAAAAGCACTAGAGCGCTTCAAGTTTTTGAGAGTTTTGGAATTGAAAGATGCACCTTTGGAAACTTTTCCAGAAGAAGTTGTCAATCTCACCCTATTAAGGTATTTGAATCTGAGGAATACCAAGATAAAGGCAGTTCCAGGCTCAGTAAAAAAGCTTCAAAACCTAGAAACTTTGGACCTCAGACAAACTTTTGTTTCCGAGTTGCCCAAAACTATACGTAAAGTTCATAAACTTGTCCATCTTGCAGTGGATAAGATAAATGAAGATCAAGGCCGGGTAGGAGCAGGTGTGTTTTCAGGAATTGGGGTTTTAGCGTCCTTACAGAAGTTGTCACTGATCAAAGCAAACAAGAACCAGCGAATTGCCGAGGAATTGGGAAATTTGACTGCAATGAGGAAACTCGGGATCACAGAACTTGAAAGCAGGGATGGAAAGGATTTGTGTGCATCGATCCAGAAGATGAAGCATCTTTCCTGTTTGCATGTAACATCAAGAAGCAAGGTGGAAGTTCTTGATCTGGATTACATGTCTACCCCGCCAAGCCTGCTTCACCGACTATCTCTGGAAGGAAAATTGCGTGCAACTCCTTCATGGATTTCCGAACTTCATAGTCTGGTCAAGATGAGTCTAAAATCATCCAGATTAGATGGTGGTCTGATTGAGGCCCTTCAAGATTTGCCTTGTCTCATGGAGCTCCAATTGGTTGATGCTTTCAATGGGAAAGAGTTGGAATTTAGGTGCAATTCGTTTCAGGAACTTAGGAAGTTAGAAGTTGAACAATCGGATCACCTGCACACGGTGCTAGTGCATGAAGGAGCAATGCCTAATCTTCAAAAGCTTACTATGAGAAGATGTAAGAACTTGAAGTTGGCTCCCTTGGGACTTAATAATCTAACCAGGCTTGAGGAAATGCATCTGTATGAAATGTCAGAGGAGCTCATAACTGAACTTGACAACTTAAGGACAGGAGAATATCATTGGATGATTGATCACATTCAAGTCATCCATACTTCTTGCTCTCCGGTGAACAGCACATACCCACGTTTCCGAAATCTTTCATCGTTTGCCAGATATTGA 2709 0.4252 MAEIAVSAALGVVQIFLSQRIPELKQKEVDIGVIKGHLETMRAYLKDIKKREHTEGARDRRNKVQEIAYKIEDALEEFMVDVPEHFHKHKFSQALHDVYHKVMDWRAFPRLSSRINDIQDKIRDIKELDSFRTSSSGVASSSRAEGVPDLAYPILKNDELVGIERRTSDLLDRLMKEASKRLVISVVGASGSGKTILIKKVCESEGVKGHFECHAWVSHSTSCKDTCEKICKEMGVPVPPGGKIEENLVNYLEDKRYLVVLDGGWKEDWCNCINILPDNGNGSRVIFSTCRLDLVSKCSDDFYNLDPLSGNEAWELFCKKAFSGSECPKHLKEISEDLLSNCGGLPLAIVALGSLLSTKSRTPAEFQKVLDSLGHNLERNFEFGIMKRVLEQRYFNLSHNLKRCFLYFCNFPGGYPVTRGRLIRLWIAEGFVEEKGDQALEVADAYLKELISGCLVDTNTWDVQGLVRSCQVNNLVRECLVSISEDERFCKVLTRQNFDEYDHRSNRHIAIHDAFTDSLQSKDFSHVRTLFMFGKENFTASVFGKALERFKFLRVLELKDAPLETFPEEVVNLTLLRYLNLRNTKIKAVPGSVKKLQNLETLDLRQTFVSELPKTIRKVHKLVHLAVDKINEDQGRVGAGVFSGIGVLASLQKLSLIKANKNQRIAEELGNLTAMRKLGITELESRDGKDLCASIQKMKHLSCLHVTSRSKVEVLDLDYMSTPPSLLHRLSLEGKLRATPSWISELHSLVKMSLKSSRLDGGLIEALQDLPCLMELQLVDAFNGKELEFRCNSFQELRKLEVEQSDHLHTVLVHEGAMPNLQKLTMRRCKNLKLAPLGLNNLTRLEEMHLYEMSEELITELDNLRTGEYHWMIDHIQVIHTSCSPVNSTYPRFRNLSSFARY* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0875 902 Pfam NB-ARC domain 167 377 IPR002182 GO:0043531
Vvi19g0875 902 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 408 IPR027417 -
Vvi19g0875 902 Gene3D - 394 483 IPR036388 -
Vvi19g0875 902 PRINTS Disease resistance protein signature 816 832 - -
Vvi19g0875 902 PRINTS Disease resistance protein signature 251 265 - -
Vvi19g0875 902 PRINTS Disease resistance protein signature 342 356 - -
Vvi19g0875 902 PRINTS Disease resistance protein signature 183 198 - -
Vvi19g0875 902 FunFam Probable disease resistance protein At1g63360 394 482 - -
Vvi19g0875 902 Gene3D - 150 305 IPR027417 -
Vvi19g0875 902 Gene3D Ribonuclease Inhibitor 514 901 IPR032675 -
Vvi19g0875 902 CDD RX-CC_like 2 127 IPR038005 -
Vvi19g0875 902 Gene3D - 308 393 IPR042197 -
Vvi19g0875 902 Pfam Rx N-terminal domain 5 91 IPR041118 -
Vvi19g0875 902 Gene3D - 4 111 - -
Vvi19g0875 902 PANTHER DISEASE RESISTANCE PROTEIN RP 42 829 IPR044974 GO:0006952
Vvi19g0875 902 SUPERFAMILY L domain-like 474 878 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0875 Vvi-Chr19 9994295 9997003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0875 543 859 Receptor kinase-like Gene Family AT2G15080 24.691 1.07e-08 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0875 K13457 - vvi:104877635 1791.55