Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0874 ATGGCCGACTCTGATCGCAAAATCCACGATTCCCAAACTCTAGTAGACGGCAACCTCCTGGCCGCTAAAGCTTTTGCGGCCGCCGGCGTCACGCTCATGTTTGGCGTCGTCGGCATACTGGTCACCTCATTCGCCAAGCGCGCCGTGTCAATCCTCATTTGCTTCCTCGCCTTCCACAACGAGCAGTGGGCGGGCTATGCTGCCTCCGCTTACGGCTATCTTACCGGCAAGGCCGACCTCCTTCTCATCGTCTCTGGCCATGGCTGTGTCCAAGGCCTGGCCGGGCTCTCCAACGCCACCGCCAACGCTTGGTCTGTGGTGATGATTTCTGGCTCCTGCAATCAGGCCGACTTCGGTCGCGGCGACTTCCAGAAGCTTGATAAGGTGGCCGCCGTCGAGCCTTTCTCCAAGTTCTCTGCAAAAGCCACTGATATTTCCCAAATACCTAAGAGCCTTTTTAAAGTCCTGGATCAAGCTCTTTCTGGTCGGCGGTTGGTACTGGATCTTTCAAATGATATTCTCCGCCAAACTGTTTCTCTATCCGAGGCCAAGGGTCTGTAG 561 0.5579 MADSDRKIHDSQTLVDGNLLAAKAFAAAGVTLMFGVVGILVTSFAKRAVSILICFLAFHNEQWAGYAASAYGYLTGKADLLLIVSGHGCVQGLAGLSNATANAWSVVMISGSCNQADFGRGDFQKLDKVAAVEPFSKFSAKATDISQIPKSLFKVLDQALSGRRLVLDLSNDILRQTVSLSEAKGL* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0874 186 PANTHER 2-HYDROXYACYL-COA LYASE 5 184 IPR045025 GO:0030976
Vvi19g0874 186 Gene3D - 1 184 - -
Vvi19g0874 186 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 22 179 IPR012001 GO:0030976
Vvi19g0874 186 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 21 179 IPR029061 -
Vvi19g0874 186 CDD TPP_PYR_POX_like 29 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0874 Vvi-Chr19 9981692 9982252 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0874 K12261 - vvi:109122614 274.633