Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0871 ATGGTGATGATTTCTGGCGCTTGCAACTTCCAAGAGCTTGATAAGGTGGCCGCCATCGAGCCTTTCTCCAAGTTTTGTGCAAAAGCCACTGATATTTCCCAGATACCTAAGAGCCTTTTTAAAGTCCCAGATCAAGCTCTTTTTGGTCGGCCCGGTGGTTGTTACTTGGATCTTCCAAATGATATTCTCCACCAAACTGTTTCTCAACCCGAGGTCGAGAGTCTGTTGGATGCTACTGAGGACAAAGCCACAATTGTGTCATCCAATAATTGTTGTTCTTTTCTAGTTTTCATAATAAAACAAGGGAAAATCATCTAA 318 0.4245 MVMISGACNFQELDKVAAIEPFSKFCAKATDISQIPKSLFKVPDQALFGRPGGCYLDLPNDILHQTVSQPEVESLLDATEDKATIVSSNNCCSFLVFIIKQGKII* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0871 105 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 10 70 IPR012001 GO:0030976
Vvi19g0871 105 Gene3D - 3 83 - -
Vvi19g0871 105 CDD TPP_PYR_POX_like 1 59 - -
Vvi19g0871 105 PANTHER 2-HYDROXYACYL-COA LYASE 8 83 IPR045025 GO:0030976
Vvi19g0871 105 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 6 72 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0871 Vvi-Chr19 9933098 9933415 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0871 K12261 - vvi:109122614 124.02