Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0862 ATGAGCGACTCCGCATACAGAGTCGAAACCACGTCGCGCCTCGCCCAATGGAGGATCGACAACCTGGCTTCCTGCACTTACCGCAAGTCCGATCCTTTCAAGATCGGCAAGTGGAATTGGCATTTATCTATAGAGAAGAATCGGACATTATCTGTTAAACTGTACCCGGAAACATCAAATTTAACCAGAGACAACCCCCCAATTGCGTCTTTCATCATCAGAGTGCTCTCTTCTGTGGGAGATCGCAAGGCTTTGGTTCATCCAGAAATAACAGACAAGCAGCTCAAGAATAACGACGATTTCGTTTGGGCGATTGAGGTTCCATTAACTGGGAAATTCATTGTCGACGTTGAATTCCTAGATTTGAAGACTTCATCACCAAACGGTGGAGAGCCTTGCTCCATCTGGGCTGAAGGATTCGCTCAAAAAAGATCAAGTACAACAGCTCTTGCATCCCTTGGCCGGATGTTGTCAGAAAACATCCACACAGACATTATAATTAATGCTTCTGATGGAAGCATTGGAGCTCATCGTGCGGTTCTGGCCTCAATATCCCCTGTTTTTCGCAGCATGTTTTCACATGACCTCAAAGAGAAAGAACTATCCACCGTAAACATCTCTGACATGTCAATTGAAGCCTGCCAAGCTTTTCTCAATTACATTTATGGGAATATCCAACACGATGAATTTCTGATCCACAGGCTGCCACTTCTCCGTGCAGCTGATAAGTACGACATTGAAGACCTGAAAGAGGCATGCCATGAGAGTCTTTTAGAAGATATTGACACTAAGAATGTGCTGGAGAGGCTCCAAAATGCATCTCTTTATCAATTGTCAAAACTGAAAACTGCCTGCTTGCGATATCTTGTGAAGTTTGGTAAGATATTTGACATTCGAGATGATTTCAATGCCTTTCTGCAGTGTGCAGATAGGGACCTGATTGCTGAAGTCTTCCATGAAGTCCTCACTGCCTGGAAAGGTTTCTGA 987 0.4438 MSDSAYRVETTSRLAQWRIDNLASCTYRKSDPFKIGKWNWHLSIEKNRTLSVKLYPETSNLTRDNPPIASFIIRVLSSVGDRKALVHPEITDKQLKNNDDFVWAIEVPLTGKFIVDVEFLDLKTSSPNGGEPCSIWAEGFAQKRSSTTALASLGRMLSENIHTDIIINASDGSIGAHRAVLASISPVFRSMFSHDLKEKELSTVNISDMSIEACQAFLNYIYGNIQHDEFLIHRLPLLRAADKYDIEDLKEACHESLLEDIDTKNVLERLQNASLYQLSKLKTACLRYLVKFGKIFDIRDDFNAFLQCADRDLIAEVFHEVLTAWKGF* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0862 328 Gene3D Potassium Channel Kv1.1; Chain A 140 291 IPR011333 -
Vvi19g0862 328 SUPERFAMILY POZ domain 146 259 IPR011333 -
Vvi19g0862 328 CDD BTB_POZ_ZBTB_KLHL-like 162 244 - -
Vvi19g0862 328 ProSiteProfiles BTB domain profile. 163 222 IPR000210 GO:0005515
Vvi19g0862 328 CDD MATH 17 103 IPR002083 GO:0005515
Vvi19g0862 328 PANTHER OS08G0495500 PROTEIN-RELATED 5 327 IPR044714 -
Vvi19g0862 328 SMART BTB_4 163 261 IPR000210 GO:0005515
Vvi19g0862 328 Pfam BTB/POZ domain 156 259 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0862 Vvi-Chr19 9756858 9758305 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vvi19g0862 BTB 3.2e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0862 K10523 - vvi:100243007 659.062