Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0859 ATGAAGATCACTGTAATGACCGCCGACGAACAGATCATCTCCTTGGACGTTGATCGCGATGAATCCGTTGAGAATGTGAAAGCTCTGCTCGAGGTGGAGACGCGTGTGCCACTGCAGCAACAGCAGTTGCTGTTTAATGGCCAGGAGATGAGGAATAATGAGAAATTGAGTGCGCTTGGTGTTAAAGACGAAGATTTGGTGATGATGGTCTCAAATGCTGCTCCAAGTTCATCTACCAATGCTTTAAGCCTCAATCCTGATGGGTCTGCTGTTAACCCTGAAGCTCTACAGCAACATTTTAGACGTGAGTCCAACACGATGGCACAGCTTTTTCAGACTGATCCTGAATTTGCACAAGCTCTTCTTGGAAATGATCTCAATAAGCTGCAGGAGATCTTACGGCAACGTCATCGCCATAGATCTGAAATTCAACGTCAACGAGATGAGGAGCTGGCTCTGCTTTATGCGGATCCTTTTGACGTGGAGGCACAGAAGAAAATTGAAGCTGCCATTCAACAGAAAGGAATTGATGAGAACTGGGCAGCTGCATTGGAATATAACCCTGAAGCTTTTGCAAGGGTGGTCATGCTGTATGTTGACATGGAAGTCAATGGAGTCCCTTTGAAGGCATTTGTTGATAGTGGAGCTCAGTCGACAATAATATCTAAAAGCTGTGCTGAGCGTTGTGGACTGTTGAGGCTTTTAGATCGACGTTATAGAGGCATTGCTCATGGAGTTGGTCAATCAGAGATACTGGGCCGAATACATGTAGCTCCAATCAAGATTGGGAATATATTTTATCCTTGTTCCTTTATGGTACTGGATTCTCCAAATATGGAATTCCTTTTTGGGCTAGATATGCTTCGTAAACACCAGTGTATAATTGATTTAAAGGACAATGTCTTAAGAGTTGGTGGAGGGGAGGTTTCAGTGCCATTTTTGCAAGAAAAGGATATTCCATCTCATTTTCTGGATGAAGAGAGGTATTCCAAGCAAGCTTCAAGCTCAGGGGGCCCAGCTGCATCAGGCGCTAAAGACAAGAATGATAATCCATCGGCTGGAGTTCAATCTGTTGGAAGCGGAGGTGGTGGTGCCTTGGCACAGGGAACGGAATTTGAAGCCAAGGTGACGAAGCTTGTTGAGTTGGGATTTGAAAGAGGGGCGGTGATACAAGCACTGAGACTTTTTAATGGAAACGAAGAGCAGGCAGCTGGGTTTCTTTTCGGGGGTTGA 1233 0.4526 MKITVMTADEQIISLDVDRDESVENVKALLEVETRVPLQQQQLLFNGQEMRNNEKLSALGVKDEDLVMMVSNAAPSSSTNALSLNPDGSAVNPEALQQHFRRESNTMAQLFQTDPEFAQALLGNDLNKLQEILRQRHRHRSEIQRQRDEELALLYADPFDVEAQKKIEAAIQQKGIDENWAAALEYNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDRRYRGIAHGVGQSEILGRIHVAPIKIGNIFYPCSFMVLDSPNMEFLFGLDMLRKHQCIIDLKDNVLRVGGGEVSVPFLQEKDIPSHFLDEERYSKQASSSGGPAASGAKDKNDNPSAGVQSVGSGGGGALAQGTEFEAKVTKLVELGFERGAVIQALRLFNGNEEQAAGFLFGG* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0859 410 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Vvi19g0859 410 Coils Coil 129 149 - -
Vvi19g0859 410 Gene3D - 1 85 - -
Vvi19g0859 410 FunFam DNA damage inducible 1 homolog 2 174 321 - -
Vvi19g0859 410 Pfam Aspartyl protease 174 296 IPR019103 GO:0004190|GO:0006508
Vvi19g0859 410 MobiDBLite consensus disorder prediction 328 362 - -
Vvi19g0859 410 Gene3D Acid Proteases 175 321 IPR021109 -
Vvi19g0859 410 SUPERFAMILY Acid proteases 182 297 IPR021109 -
Vvi19g0859 410 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Vvi19g0859 410 Pfam UBA/TS-N domain 373 406 IPR015940 -
Vvi19g0859 410 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 370 410 IPR015940 -
Vvi19g0859 410 CDD RP_DDI 181 304 IPR019103 GO:0004190|GO:0006508
Vvi19g0859 410 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 407 - -
Vvi19g0859 410 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Vvi19g0859 410 SMART uba_6 372 409 IPR015940 -
Vvi19g0859 410 SUPERFAMILY UBA-like 358 410 IPR009060 GO:0005515
Vvi19g0859 410 CDD UBA_scDdi1_like 373 408 - -
Vvi19g0859 410 Gene3D - 340 410 - -
Vvi19g0859 410 SMART ubq_7 1 72 IPR000626 GO:0005515
Vvi19g0859 410 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0859 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 28.571 2.28e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0859 K11885 - vvi:100248128 764.607