Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0856 ATGTTCCAAAGCCTTTCCTCTTCCTTTGCCCTTTCCTCACCCCCAATCCATTTTCGCGCCGGATCTGCTCCTTCAATGTCTTGTAGCCGGAATCCCTGCCACGCCTCCATGCAAACCTTGGTGGAGGCCACCAGAAAGCCCTCCAGTCTCTACGAGGTGCTTAGGGTGAAGCAGACGGCGTCGCCCACGGAGATCAAGACGGCGTACAGGAGCTTGGCCAAGATGTACCACCCCGACGCGTCGCCGGTGGATTCGGACGGGCGTAACTTCATCCAGATTCACAACGCCTATGAGACGCTTTCCGATCCAGCGGCGAGGGCCGTGTATGATCTGTCGTTAGGGTCGACGGGACGGCGGCCGTATGCGTATGCGTGTTCGTCCGGGGGGGTCCGGGGTCGGAGTGCGCACTATTCGACCCGGAGATGGGAAACTGATCAGTGTTGGTAG 447 0.5928 MFQSLSSSFALSSPPIHFRAGSAPSMSCSRNPCHASMQTLVEATRKPSSLYEVLRVKQTASPTEIKTAYRSLAKMYHPDASPVDSDGRNFIQIHNAYETLSDPAARAVYDLSLGSTGRRPYAYACSSGGVRGRSAHYSTRRWETDQCW* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0856 148 CDD DnaJ 51 102 IPR001623 -
Vvi19g0856 148 Gene3D DnaJ domain 34 124 IPR036869 -
Vvi19g0856 148 PRINTS DnaJ domain signature 69 84 IPR001623 -
Vvi19g0856 148 PRINTS DnaJ domain signature 85 105 IPR001623 -
Vvi19g0856 148 PRINTS DnaJ domain signature 51 69 IPR001623 -
Vvi19g0856 148 Pfam DnaJ domain 50 110 IPR001623 -
Vvi19g0856 148 SUPERFAMILY Chaperone J-domain 47 116 IPR036869 -
Vvi19g0856 148 ProSitePatterns Nt-dnaJ domain signature. 90 109 IPR018253 -
Vvi19g0856 148 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 17 148 - -
Vvi19g0856 148 SMART dnaj_3 48 105 IPR001623 -
Vvi19g0856 148 ProSiteProfiles dnaJ domain profile. 49 113 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0856 Vvi-Chr19 9657887 9658333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0856 51 110 C2H2 Transcription Factor Family AT1G74250 41.791 4.36e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0856 - - vvi:100265189 300.056