Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0851 ATGGACTACAGGTTACAGTTTGTTGGGCTCCAATCAAATCCAGAAATGGAGATGGGATCATTAGAGGAGAGATCAAATCATGAGCTTGAGGATGAGAGTCTCATAAGTCCAGCAAAAATTGGGCAAAAGACAAACTCTTTTCACGCACCACAATTGGGATCTTCTTGTCGAGATTGGCGAATTTGGAGCAGTAAACTTTTGGGGAATGCTGTATTTATGAGCATCCGGGTTGTTGTTTTCTCCAGCAAACTCAACTTGCTTATGCCTTTTGGGCCTCTAGCAGTCTTAGTCCATGGTTTGAGTGACCATAATGGCTGGGTCTTCTTTCTAACCTTGTTAGGGATAACACCATTGGCTGAGCGTTTAGGTTATGCTACAGAGCAGCTGTCTTTCTATACTGGGGATACAGTTGGGGGTCTTTTGAATGCTACTTTTGGAAATGCAACAGAACTAATTATATCAATTTATGCTTTGAAAAGTGGTATGATACGTGTTGTTCAGCAGTCATTACTGGGCTCAATTCTGTCAAATATGTTATTGGTGCTTGGATGTGCATTCTTTTGTGGTGGGATTGTTTTCAATAACAAGCAGCAGGTGTTTAACAAGGCAATTGCTGTTCTGAACTCTGGGTTGCTATTGATGGCAGTCATGGGCCTACTCTTTCCAGCTGTTCTACACTTCACACACACTGAAGTTCATTTTGGGAGGTCAGAGTTGGCTCTTTCAAGGTTTAGCAGCTGTATTATGCTTCTGGCATATGCTGGCTACCTTGTTTTCCAGTTAAAGAGCCAAAAGGATCTATATATGTCTATTGCTGAGGGAGGGACTCTGCCTGAAGAGGGCTCAGATGATGATGAAGGTCCAGAGATCTCTAAATGGGAATCAGTAATTTGGCTTTCGATCTTAACTGCTTGGATAGCAATCCTATCAGAATATCTTGTTGATGCAATAGAGGGTGCATCGATTGCGTGGAAAATGCCTGTTTCATTTATTAGCGTGATTTTGCTTCCAATTGTAGGGAATGCTGCAGAGCACGCAAGTGCTATTATGTTTGCTATGAAAGATAAGCTTGACATTTCCTTAGGAGTGGCAATAGGGTCATCAACACAGATATCTATGTTTGCGATTCCCTTTTGTGTGGTTATTGGGTGGATAATGGGCTGCCCCATGGACTTAAATTTTCAACTTTTTGAGACAGCAACACTTTTTATAACTGTTTTGGTTGTGGCCTTCTTGCTTCAGGAAGGCACTTCTAATTACTTTAAAGGACTAATGCTCATTCTTTGCTATCTAATAGTTGCAGCAAGTTTCTTTGTACATGTCGATCCTACTTTAGTAGAACATAAAACATAG 1353 0.4109 MDYRLQFVGLQSNPEMEMGSLEERSNHELEDESLISPAKIGQKTNSFHAPQLGSSCRDWRIWSSKLLGNAVFMSIRVVVFSSKLNLLMPFGPLAVLVHGLSDHNGWVFFLTLLGITPLAERLGYATEQLSFYTGDTVGGLLNATFGNATELIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFCGGIVFNNKQQVFNKAIAVLNSGLLLMAVMGLLFPAVLHFTHTEVHFGRSELALSRFSSCIMLLAYAGYLVFQLKSQKDLYMSIAEGGTLPEEGSDDDEGPEISKWESVIWLSILTAWIAILSEYLVDAIEGASIAWKMPVSFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFAIPFCVVIGWIMGCPMDLNFQLFETATLFITVLVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPTLVEHKT* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0851 450 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 30 443 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vvi19g0851 450 NCBIfam calcium/proton exchanger 74 438 - -
Vvi19g0851 450 NCBIfam calcium/proton exchanger 88 438 IPR004798 GO:0006816|GO:0015369
Vvi19g0851 450 FunFam Vacuolar cation/proton exchanger 135 274 - -
Vvi19g0851 450 Gene3D - 133 280 IPR044880 -
Vvi19g0851 450 Gene3D - 281 439 IPR044880 -
Vvi19g0851 450 FunFam Vacuolar cation/proton exchanger 283 439 - -
Vvi19g0851 450 Pfam Sodium/calcium exchanger protein 296 435 IPR004837 GO:0016020|GO:0055085
Vvi19g0851 450 Pfam Sodium/calcium exchanger protein 106 261 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0851 Vvi-Chr19 9498066 9503555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0851 15 443 Antiporters AT1G55730 72.727 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0851 K07300 - vvi:100249832 873.233