Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0848 ATGGAGGAGCCTTCTATGGGTCGGATCCCGTGTTGCGAGAAGGACAATGTTAAGAGGGGGCAATGGACACCGGAGGAAGACAACAAACTCTCTTCCTATATCGCCCAGCATGGCACCCGCAACTGGCGCCTCATCCCTAAGAATGCCGGTCTCCAGAGATGTGGGAAGAGCTGTAGGCTGCGATGGACGAATTACCTTCGTCCTGATCTGAAGCATGGCCAATTCTCGGATGCAGAAGAACAGACCATCGTGAAGCTTCATTCAGTTGTTGGCAACCGCTGGTCATTGATAGCAGCTCAGCTGCCTGGCCGCACCGATAATGATGTTAAGAATCACTGGAACACCAAGCTGAAAAAGAAGCTTTCAGGCATGGGAATTGATCCGGTCACCCACAAGCCCTTTTCCCATCTCATGGCCGAGATTGCCACCACGCTGGCTCCTCCACAGGTGGCTCACCTTGCTGAAGCGGCCCTCGGCTGCTTTAAAGATGAAATGCTCCACCTGCTTACCAAAAAGCGTATCGACTTCCAGTTTCAGCAATCTGGCGCTGCACCAGGAAACACTGCAGCCACTTACACTGCCAACAAACAAGATGAAAAAGATGATACCATTGAGAAGATCAAGCTGGGATTATCAAGGGCCATGCAAGAGCCTGCAATGCTACCCTTGAACAAGCCTTGGGACTCCAATGGAGCCACTTCCGCAAATTTTGCTGGGGCCTGCAGTGGCTTCCCCATATCTGTCCCTGGATTTCAGTATGGCCCATCACCGTTTGGAAACGAAGGCGATGGATCACCATGGAGCCAGAGTATGTGTACTGGGAGCACATGCACAGCAGGGGACCAGCAAGGGCGGCTGCATGAGAAACTCGAGGATGAAAATGGGGAAGAGACTGGGGGTGGAAAAGAAATTAGACACTCGTCCAGCATATTCAATTCAGACTGCGTCCTATGGGATTTACCATCTGATGATCTGATGGACCCTATGGTTTGA 993 0.5156 MEEPSMGRIPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDAEEQTIVKLHSVVGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQVAHLAEAALGCFKDEMLHLLTKKRIDFQFQQSGAAPGNTAATYTANKQDEKDDTIEKIKLGLSRAMQEPAMLPLNKPWDSNGATSANFAGACSGFPISVPGFQYGPSPFGNEGDGSPWSQSMCTGSTCTAGDQQGRLHEKLEDENGEETGGGKEIRHSSSIFNSDCVLWDLPSDDLMDPMV* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0848 330 FunFam transcription factor MYB80 74 134 - -
Vvi19g0848 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 121 IPR017930 -
Vvi19g0848 330 CDD SANT 22 66 IPR001005 -
Vvi19g0848 330 CDD SANT 75 117 IPR001005 -
Vvi19g0848 330 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Vvi19g0848 330 FunFam Transcription factor RAX3 12 72 - -
Vvi19g0848 330 Gene3D - 74 133 - -
Vvi19g0848 330 SUPERFAMILY Homeodomain-like 16 113 IPR009057 -
Vvi19g0848 330 Gene3D - 19 71 - -
Vvi19g0848 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 70 IPR017930 -
Vvi19g0848 330 SMART sant 71 119 IPR001005 -
Vvi19g0848 330 SMART sant 18 68 IPR001005 -
Vvi19g0848 330 PANTHER F14D16.11-RELATED 6 329 - -
Vvi19g0848 330 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Vvi19g0848 330 Pfam Myb-like DNA-binding domain 73 115 IPR001005 -
Vvi19g0848 330 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0848 Vvi-Chr19 9479751 9482266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0848 6 176 MYB Transcription Factor Family AT5G56110 92.398 1.16e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi19g0848 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0848 K09422 - vvi:100265285 684.871