Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0837 ATGTCCTTTGGGTATTTAGATTATTCATCATCATCAGCTAGGTCTGGCTGGACTCGTTCGGAGAACATTCTTTTAGAGAGAGCCATCTTGATGTTCCCAGAAGAAATCCCAGATCGTTGGTACAAAATTGCCAATCAAATTCCTGGAAAATCTACTATTGATGTGTTGGAACATTACATCAAACTCATACAGGATACTGATGCAATAGATTTTGGCTCTATGGATTGGTACATTCCGTCCATGTGGGGCTTGAAAGAAGATGAAGGGGAAGAAGTTAGTGGCTTAAAAGACATGAAAGGGGGGACTTCATCAACAAAAGAGGAGGAACCTAGTCACTTTAAAGAAAGGAAAAAGGGGGCTCCTTGGACTGAGGAGGAGCACACATGGTTTCTACAAGGACTTCTAAAATTTGGGAAAGGTGATTGGAAGAACATCTCTAGACACTGTGTAACGACCAGGACTCCAACTCAAGTTGCTAGCCATGCTCAAAAGTATTTTGCACGGCAAAAGTCTGGAAATGCAGAGAAGAGGAGGAAAAGATCAAGCATTCATGACATCACCACCAGTGATCTTCATTCTCCACATGGTGGTGCTGCCTCATAG 603 0.4262 MSFGYLDYSSSSARSGWTRSENILLERAILMFPEEIPDRWYKIANQIPGKSTIDVLEHYIKLIQDTDAIDFGSMDWYIPSMWGLKEDEGEEVSGLKDMKGGTSSTKEEEPSHFKERKKGAPWTEEEHTWFLQGLLKFGKGDWKNISRHCVTTRTPTQVASHAQKYFARQKSGNAEKRRKRSSIHDITTSDLHSPHGGAAS* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0837 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 170 IPR017930 -
Vvi19g0837 200 FunFam transcription factor MYB1R1 120 171 - -
Vvi19g0837 200 CDD SANT 121 166 IPR001005 -
Vvi19g0837 200 MobiDBLite consensus disorder prediction 92 120 - -
Vvi19g0837 200 Gene3D - 8 76 - -
Vvi19g0837 200 MobiDBLite consensus disorder prediction 170 186 - -
Vvi19g0837 200 NCBIfam myb-like DNA-binding domain, SHAQKYF class 117 169 IPR006447 GO:0003677
Vvi19g0837 200 ProSiteProfiles Myb-like domain profile. 114 166 IPR001005 -
Vvi19g0837 200 Pfam Myb-like DNA-binding domain 121 166 IPR001005 -
Vvi19g0837 200 CDD SANT 17 63 IPR001005 -
Vvi19g0837 200 ProSiteProfiles Myb-like domain profile. 9 63 IPR001005 -
Vvi19g0837 200 SUPERFAMILY Homeodomain-like 10 65 IPR009057 -
Vvi19g0837 200 SMART sant 13 65 IPR001005 -
Vvi19g0837 200 SMART sant 118 168 IPR001005 -
Vvi19g0837 200 MobiDBLite consensus disorder prediction 166 200 - -
Vvi19g0837 200 Gene3D - 120 171 - -
Vvi19g0837 200 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 11 193 IPR043363 -
Vvi19g0837 200 SUPERFAMILY Homeodomain-like 116 171 IPR009057 -
Vvi19g0837 200 ProSiteProfiles SANT domain profile. 122 170 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0837 Vvi-Chr19 9307511 9308113 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi19g0837 Myb_DNA-binding 2.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0837 - - vvi:100259989 415.616