Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0836 ATGGATGTGCTTGAACACTACATAAAACTCATACAAGATATCGATGCGATCGACTTCGGTAGTATGGATCAGTACATTCCAGACCGGTGGGATTTAGAGGAGGAAGATCAGGAGGAAGAAGAAGGCAGTACTGGCTCAAAAGTCGAGAAGAAGAAAGGGACTCCATGGACTGAAGAAGAGCACGTACTGTTTCTTGAAGGATTAGTCAAATATGGAAAAGGTGACTGGAAAAGCATCTCTAGAAACTTTGTGATAACCAGGACGCCATCCCAGGTTGCAAGCCATGCTCAGAAGTACTTTGCAAGACAAAGGCCTGGGAATATGGGCAAGAAAAGGAAGAGAACCAGCATTCATGATATCACGACTGATGATCTTCCTCCACTAGGTGGTGTAACTCCATAG 402 0.4453 MDVLEHYIKLIQDIDAIDFGSMDQYIPDRWDLEEEDQEEEEGSTGSKVEKKKGTPWTEEEHVLFLEGLVKYGKGDWKSISRNFVITRTPSQVASHAQKYFARQRPGNMGKKRKRTSIHDITTDDLPPLGGVTP* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0836 133 ProSiteProfiles Myb-like domain profile. 48 100 IPR001005 -
Vvi19g0836 133 MobiDBLite consensus disorder prediction 94 133 - -
Vvi19g0836 133 SUPERFAMILY Homeodomain-like 50 104 IPR009057 -
Vvi19g0836 133 SMART sant 52 102 IPR001005 -
Vvi19g0836 133 MobiDBLite consensus disorder prediction 28 56 - -
Vvi19g0836 133 NCBIfam myb-like DNA-binding domain, SHAQKYF class 51 103 IPR006447 GO:0003677
Vvi19g0836 133 ProSiteProfiles SANT domain profile. 51 104 IPR017884 -
Vvi19g0836 133 CDD SANT 55 100 IPR001005 -
Vvi19g0836 133 Pfam Myb-like DNA-binding domain 55 100 IPR001005 -
Vvi19g0836 133 Gene3D - 54 104 - -
Vvi19g0836 133 FunFam transcription factor MYB1R1 54 105 - -
Vvi19g0836 133 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 104 IPR017930 -
Vvi19g0836 133 PANTHER TRANSCRIPTION FACTOR KUA1 4 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0836 Vvi-Chr19 9268237 9268638 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi19g0836 Myb_DNA-binding 6.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0836 - - vvi:100253165 271.166