Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0831 ATGCCTGCAACTCTAAGGAATCTCTTGCTTTCTCCCAATATCTTCTCCTTCTCCTTTACCTTCCTTCTCTCAATAAACTCTCTTTTCTTCTCCTGTTGTTTCTCCATTGATGAACAGGGCCAAGCTCTTTTAACATGGAAGAACGGTTTAAACAGCTCTACAGATGTGCTGAGGTCATGGAATCCTTCAGACCCCAGTCCATGCAACTGGTTTGGGGTTCATTGCAACCCAAATGGAGAAGTAGTTCAGATAAGCTTGAGATCAGTAGACTTGCAGGGCCCATTGCCTTCAAATTTTCAGTCTCTCAATTCCTTGAAGAGCCTTATCCTCCCATCAGCCAATCTCACCGGCACAATTCCGAAAGAGTTTGGAGAATACCGTGAACTGGCTCTCATCGATCTTAGTGGCAATTCAATCACAGGCGAAATCCCAGAGGAGATTTGCAGGCTGAGCAAACTGCAAAGTTTATCCCTTAATACAAATTTTCTGGAAGGGGAAATTCCTTCCAACATTGGGAACCTCTCAAGTCTTGTGTACCTGACACTATACGACAATCAACTGAGTGGCGAAATTCCAAAGAGTATTGGAGAATTAACCAAGCTAGAAGTTTTCCGAGCTGGTGGTAATCAAAATCTCAAAGGTGAGCTACCATGGGAGATTGGAAACTGCACAAACTTGGTTATGATAGGCCTTGCAGAGACCAGCATTTCTGGAAGTCTTCCTTTGTCAATTGGGATGCTGAAGAGAATCCAAACCATTGCCATTTATACTGCTCTATTGTCGGGTCCCATCCCACAAGAGATTGGAAACTGCAGTGAGTTGCAGAATCTGTACTTGTATCAGAATTCCATCTCCGGTCCAATCCCCAGGGGAATTGGGGAGCTTGCAAAGCTTCGGAGTCTACTGTTGTGGCAGAACAGCTTTGTGGGTACAATACCATCTGAAATAGGAGCCTGCTCTGAGCTCACAGTGATTGACTTATCGGAGAATCTTCTGTCAGGCAGCATACCAGGAAGTTTTGGAAACCTTTTGAAGCTTCGGGAACTTCAACTGAGCGTTAATCAGTTATCAGGCTTCATACCTTCTGAAATCACAAACTGCACAGCTCTGAATCATCTTGAAGTTGACAACAACGACATTTCTGGTGAGATTCCGGTTCTTATCGGCAACTTGAAGAGCTTGACTCTGCTCTTCGCCTGGCAGAATAAGCTTACAGGCAGTATTCCAGAGAGCCTTTCCAATTGTGAGAATCTTCAGGCCCTTGATCTGTCATACAATCACCTCTCTGGTTCAATCCCAAAACAGATTTTTGGATTGAAAAACCTCACCAAGGTGCTGCTGCTTTCAAATGAGCTATCAGGCTTTATACCGCCTGATATCGGAAACTGCACAAATTTGTATAGGTTCCGGCTTAATGACAATAGGCTGGCAGGTACTATTCCATCGGAGATTGGAAATTTGAAGAGTCTGAATTTCCTGGACATGAGCAACAACCATCTCGTTGGGGGAATTCCTCCATCAATTTCAGGATGCCAAAACCTTGAGTTTCTTGATCTTCACTCAAATGGGCTCATTAGTTCTGTGCCTGATACGCTGCCCATAAGCCTACAGCTTGTGGACGTATCAGACAATATGCTTACAGGTCCGCTGACTCCGTACATTGGGTCACTAGTTGAACTAACCAAACTCAACCTGGGGAAGAATCGACTTTCGGGGACAATCCCAGCTGAGATCCTTTCCTGCAGTAAGCTACAATTGTTAGATCTCGGAAACAATGGCTTCTCCGGTGAAATTCCGAAGGAATTGGGTCAACTTCCAGCGCTGGAAATCTCTCTCAACCTTAGCTGCAACCAGCTTACAGGCGAAATCCCAAGCCAGTTCTCTAGCCTTAGCAAGCTGGGGGTCCTTGATCTCTCTCATAACAAGCTCACTGGGAATTTGAATATCCTCACGAGCCTCCAAAATCTAGTTTTCCTCAATGTCTCCTATAATGACTTCTCCGGTGAACTGCCTGATACCCCATTCTTTCGGAACCTCCCCATGAGTGACCTTGCTGGAAATCGAGCTCTCTACATCTCCAATGGGGTTGTGGCCCGGGCCGACAGCATAGGCCGTGGCGGGCACACCAAGTCGGCAATGAAGCTGGCCATGTCCATCCTCGTTAGCGCCAGTGCAGTACTGGTACTACTTGCAATTTACATGCTAGTTCGTGCCCGTGTCGCCAACAGGCTCTTAGAAAATGATACTTGGGATATGACTTTGTACCAGAAGCTGGATTTCTCCATTGATGACATAATCCGGAACCTAACATCAGCTAATGTGATCGGGACGGGAAGCTCTGGAGTGGTATACAGGGTGGCAATTCCAGATGGACAAACACTCGCAGTGAAGAAGATGTGGTCATCAGAAGAGTCGGGAGCATTCAGTTCTGAAATTCGGACACTGGGCTCGATCCGGCACCGGAATATTGTGAGACTTCTGGGATGGGGATCAAACCGGAGCCTGAAACTGCTGTTCTACGATTACCTTCCCAATGGAAGCTTGAGCTCGCTCCTTCATGGTGCGGGAAAGGGAGGGGCAGACTGGGAGGCAAGGTATGATGTTGTGCTGGACGTGGCACACGCCGTTGCTTATTTGCACCATGACTGTGTGCCTGCAATCTTGCATGGGGATGTGAAAGCCATGAACGTGTTGTTGGGTCCTAAGCTTGAAGCTTATCTTGCTGATTTTGGGCTGGCTAGGGTTGTGAATAACAGTGGTGAGGATGATTTCTCCAAAATGGGCCAGAGACCTCACCTTGCTGGCTCTTATGGATACATGGCTCCTGAACATGCTTCAATGCAACGTATCACAGAGAAGAGCGATGTTTACAGTTTTGGTGTGGTTCTTCTGGAGGTTTTGACAGGAAGGCATCCCTTAGACCCAACCTTGCCTGGGGGTGCACACTTGGTTCAGTGGGTTCGTGATCATTTGTCGAAAAAGCTGGACCCAGTTGACATTCTTGATCCAAAGCTTAGGGGGAGGGCTGACCCTCAGATGCATGAAATGCTCCAAACGCTAGCAGTTTCATTTCTCTGTATCAGCACCCGAGCCGAGGATCGTCCAATGATGAAGGATGTTGTGGCAATGCTCAAGGAAATTCGACAAGTCGATGCTCTAAGGGCAGAGACTGACTTGTTGAAGGGGGATTTGTCGACTCTACCTTCATCTCCTCCTACTCACAACATGGTTCTGCAAGGATCTTCTAACTGTTCCTTTGCTTTCTCTGATGAGTCAGTCTGA 3282 0.4692 MPATLRNLLLSPNIFSFSFTFLLSINSLFFSCCFSIDEQGQALLTWKNGLNSSTDVLRSWNPSDPSPCNWFGVHCNPNGEVVQISLRSVDLQGPLPSNFQSLNSLKSLILPSANLTGTIPKEFGEYRELALIDLSGNSITGEIPEEICRLSKLQSLSLNTNFLEGEIPSNIGNLSSLVYLTLYDNQLSGEIPKSIGELTKLEVFRAGGNQNLKGELPWEIGNCTNLVMIGLAETSISGSLPLSIGMLKRIQTIAIYTALLSGPIPQEIGNCSELQNLYLYQNSISGPIPRGIGELAKLRSLLLWQNSFVGTIPSEIGACSELTVIDLSENLLSGSIPGSFGNLLKLRELQLSVNQLSGFIPSEITNCTALNHLEVDNNDISGEIPVLIGNLKSLTLLFAWQNKLTGSIPESLSNCENLQALDLSYNHLSGSIPKQIFGLKNLTKVLLLSNELSGFIPPDIGNCTNLYRFRLNDNRLAGTIPSEIGNLKSLNFLDMSNNHLVGGIPPSISGCQNLEFLDLHSNGLISSVPDTLPISLQLVDVSDNMLTGPLTPYIGSLVELTKLNLGKNRLSGTIPAEILSCSKLQLLDLGNNGFSGEIPKELGQLPALEISLNLSCNQLTGEIPSQFSSLSKLGVLDLSHNKLTGNLNILTSLQNLVFLNVSYNDFSGELPDTPFFRNLPMSDLAGNRALYISNGVVARADSIGRGGHTKSAMKLAMSILVSASAVLVLLAIYMLVRARVANRLLENDTWDMTLYQKLDFSIDDIIRNLTSANVIGTGSSGVVYRVAIPDGQTLAVKKMWSSEESGAFSSEIRTLGSIRHRNIVRLLGWGSNRSLKLLFYDYLPNGSLSSLLHGAGKGGADWEARYDVVLDVAHAVAYLHHDCVPAILHGDVKAMNVLLGPKLEAYLADFGLARVVNNSGEDDFSKMGQRPHLAGSYGYMAPEHASMQRITEKSDVYSFGVVLLEVLTGRHPLDPTLPGGAHLVQWVRDHLSKKLDPVDILDPKLRGRADPQMHEMLQTLAVSFLCISTRAEDRPMMKDVVAMLKEIRQVDALRAETDLLKGDLSTLPSSPPTHNMVLQGSSNCSFAFSDESV* 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0831 1093 Gene3D Ribonuclease Inhibitor 38 188 IPR032675 -
Vvi19g0831 1093 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Vvi19g0831 1093 FunFam Putative LRR receptor-like serine/threonine-protein kinase 754 842 - -
Vvi19g0831 1093 FunFam Leucine-rich receptor-like protein kinase family protein 36 193 - -
Vvi19g0831 1093 SUPERFAMILY Protein kinase-like (PK-like) 759 1044 IPR011009 -
Vvi19g0831 1093 ProSitePatterns Serine/Threonine protein kinases active-site signature. 887 899 IPR008271 GO:0004672|GO:0006468
Vvi19g0831 1093 Gene3D Ribonuclease Inhibitor 252 364 IPR032675 -
Vvi19g0831 1093 FunFam Predicted protein 194 290 - -
Vvi19g0831 1093 Gene3D Ribonuclease Inhibitor 611 695 IPR032675 -
Vvi19g0831 1093 Pfam Leucine Rich Repeat 486 511 IPR001611 GO:0005515
Vvi19g0831 1093 FunFam Putative LRR receptor-like serine/threonine-protein kinase 611 696 - -
Vvi19g0831 1093 ProSiteProfiles Protein kinase domain profile. 769 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0831 1093 ProSitePatterns Protein kinases ATP-binding region signature. 775 798 IPR017441 GO:0005524
Vvi19g0831 1093 PRINTS Leucine-rich repeat signature 630 643 - -
Vvi19g0831 1093 PRINTS Leucine-rich repeat signature 418 431 - -
Vvi19g0831 1093 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 351 1038 - -
Vvi19g0831 1093 Pfam Leucine rich repeat 611 666 IPR001611 GO:0005515
Vvi19g0831 1093 Pfam Leucine rich repeat 321 380 IPR001611 GO:0005515
Vvi19g0831 1093 SUPERFAMILY RNI-like 84 405 - -
Vvi19g0831 1093 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 843 1061 - -
Vvi19g0831 1093 SMART LRR_typ_2 391 415 IPR003591 -
Vvi19g0831 1093 SMART LRR_typ_2 174 198 IPR003591 -
Vvi19g0831 1093 SMART LRR_typ_2 605 629 IPR003591 -
Vvi19g0831 1093 SMART LRR_typ_2 295 319 IPR003591 -
Vvi19g0831 1093 SMART LRR_typ_2 150 173 IPR003591 -
Vvi19g0831 1093 SMART LRR_typ_2 630 660 IPR003591 -
Vvi19g0831 1093 SMART LRR_typ_2 343 367 IPR003591 -
Vvi19g0831 1093 SMART LRR_typ_2 416 439 IPR003591 -
Vvi19g0831 1093 SMART LRR_typ_2 557 581 IPR003591 -
Vvi19g0831 1093 SMART LRR_typ_2 487 511 IPR003591 -
Vvi19g0831 1093 Gene3D Ribonuclease Inhibitor 365 610 IPR032675 -
Vvi19g0831 1093 FunFam Leucine-rich receptor-like protein kinase family protein 338 610 - -
Vvi19g0831 1093 ProSiteProfiles Leucine-rich repeat profile. 632 654 IPR001611 GO:0005515
Vvi19g0831 1093 Pfam Protein kinase domain 772 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0831 1093 Gene3D Ribonuclease Inhibitor 189 251 IPR032675 -
Vvi19g0831 1093 Gene3D Phosphorylase Kinase; domain 1 736 842 - -
Vvi19g0831 1093 Gene3D Transferase(Phosphotransferase) domain 1 843 1061 - -
Vvi19g0831 1093 SMART serkin_6 769 1017 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0831 1093 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Vvi19g0831 1093 SUPERFAMILY RNI-like 384 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0831 Vvi-Chr19 9194802 9198196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0831 33 1093 Receptor kinase-like Gene Family AT5G56040 69.581 0.0 1484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi19g0831 Pkinase 1.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0831 - - vvi:100256562 2122.44