Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0819 ATGAACACCCGGTACTTTTTCCCACCGGATTCACTCTGCAATTCAGGAATCTCGGTATCATTTTCATCCCTATCTCCAGCAGGAGAGGACAGAATGGCAGCTGGTGTGAGGAACAGATCTTCTCGGGCTCCCCCTTCATCGTTCCTGATAAGAACAGCTATGAGGATATCAAGGGCAAGGTGGTTTAGCTTCCTGAGAAGAGTGTTCCACTACCAGAATGGATCAAGATCTGATCTGGGCGCCAATCCTTTCAATTCCAGCACTTGGATGATACTGGAGTTTATAGCTTTGGTTGTTCAAATAGGCGTTATAACCTTCACTCTCTCGGTTTCCAAGGCTGAGAGGCCCGTCTGGCCTATGAGAATTTGGATAGTTGGATACGATTTCGGGTGTGTCCTAAGCTTGCTACTGCTCTACTGGCGTTACCAGCGCCCTTATTCAGCTCAAGGAGATGGTTTTAGCCTCCCTGACATTGAACAGCAGAGAAACAACGAAGAATCCAGGAGCTCCCATTTGATGAACAAGTGCCGGACTTCTCTTGAGCTTTTCTTTGCTATATGGTTCGTGATGGGCAATGTTTGGGTGTTCGACTCTCGCTTTGGATCGTTCCATCGAGCGCCAAAGCTTCATGTCCTCTGCATTACTCTGCTTGCCTGGAATGCTATTAGCTACTCTTTCCCATTCCTATTGTTTGTGCTGCTGTGTTGCTGCGTCCCACTGGTTAGCAACCTCCTAGGATACAACATGAACATGGGGTCAGTGGATAAAGGGGCGTCTGATGACCAAATTTCCAGGCTACCCAGCTGGAGATTCAAAGAAGCCAACGCCAATTTGGATCTCCCCAATGGCGCTGACAGCAATTCTCCTCTTTCAAGTGAATACCCTGAGTGCTGCATTTGCTTAGCTAAATACCGAGAAAAGGAAGAGGTGAGGCAGTTGCCGTGCTCACACATGTTTCACTTGAAGTGTGTGGATCAGTGGCTCAGGATCATATCTTGCTGCCCTCTTTGTAAGCAAGAAATTGAGAGATGA 1032 0.4767 MNTRYFFPPDSLCNSGISVSFSSLSPAGEDRMAAGVRNRSSRAPPSSFLIRTAMRISRARWFSFLRRVFHYQNGSRSDLGANPFNSSTWMILEFIALVVQIGVITFTLSVSKAERPVWPMRIWIVGYDFGCVLSLLLLYWRYQRPYSAQGDGFSLPDIEQQRNNEESRSSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFHRAPKLHVLCITLLAWNAISYSFPFLLFVLLCCCVPLVSNLLGYNMNMGSVDKGASDDQISRLPSWRFKEANANLDLPNGADSNSPLSSEYPECCICLAKYREKEEVRQLPCSHMFHLKCVDQWLRIISCCPLCKQEIER* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0819 343 SMART ring_2 297 337 IPR001841 -
Vvi19g0819 343 SUPERFAMILY RING/U-box 296 341 - -
Vvi19g0819 343 ProSiteProfiles Zinc finger RING-type profile. 297 338 IPR001841 -
Vvi19g0819 343 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 17 341 - -
Vvi19g0819 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 342 IPR013083 -
Vvi19g0819 343 Pfam RING-like zinc finger 296 324 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0819 Vvi-Chr19 9082908 9084670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0819 48 341 C3H Transcription Factor Family AT4G26580 70.270 2.23e-146 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0819 - - vvi:100260079 694.501