Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0815 ATGGACATGGGAAAACAGGACGAAATTGAGGCCATGGCACTGTCTCCCCCATCAATGAGCTCCATGCATATTGCAGGGAGCAATGGCTTTGGTCACAACATTGACTTCATGTCTCAAGCCTACATTAGGAATAGGAACTCAGAGATTGATATAGAGGATGATAGTTTCCGTACTCATCAAGATCACCCTCTCCCCATATTTCTCAAGTTTGAAGATGTGGAGTATGGAGTAAGAAACAATGCAGCTTCCCGGAACCCGGTGAAGGCAGTGGTTTCAAGAGTGGCCTCACAGCTGAGCATGGAGCAGGACAACTACAAGCGTATCTTGAAGGGTATAACAGGTAGCATTGGGCCAGGGGAAATCCTTGGTTTGATGGGTCCATCTGGGAGTGGGAAAACAACCTTACTGAAGATAATAGGAGGAAGACTACATGAAAATGTTAAGGGAACCATAACCTATAATGACATCCCATATAATCCAGCTCTTAAGAGGAGGATTGGATTTGTGACACAAGATGATGTGCTCTTGCCCCAGTTGACAGTGGAAGAAACCTTAGTTTTTGCTGCTTTTTTGAGACTTCCAAGCAACATGAGCAGAAAACAGAAGTATGCAAGAGTGGAGATGATTGTGAAGGAACTGGGTCTAGAAAGATGTCGCCATACCAAAGTAGGAGGAGGATTTGTGAAGGGAATATCTGGTGGGGAGAGAAAAAGAACGAGTATCGGATACGAAATTCTTGTAGATCCATCATTGTTGTTGCTTGATGAACCAACTTCAGGCCTTGATTCCACTTCTGCAAATAGGCTTCTGCAGATTCTTCAAGGTGTTGCTAAGGCAGGTAGGACAATAATCACAACCATACATCAGCCTTCAAGCAGGATGTTTCACATGTTCAACAAGATTCTGCTGATAGCAGAAGGCTACCCTGTGTACTATGGGAAGGCCAGAGAGTCTATGGACTATTTTTCGTCTCTGAGATTTGTCCCTGAGATAGCCATGAATCCTGCAGAGTTCTTGCTGGATTTAGCTACTGGTCAAGTGAATGATATCAGCATCCCCCAAGATTTACAGGCACCTCAAGTCCCCCCTGAATCTGAGAGGGATGTGGTCAAATATCTGCAAGTCAAGTACAAAACTGAGTTGGAACCAAAAGAGAAAGAAGAGAATCATTGGGCAACAAAAATCCCGGAACATCTGCAATTAGCCATCCAAGTCAAGAAGGATTGGACGATGAGTTGGTGGGAACAGTTCTTGATATTGACCAGAAGAACATTCAGGGAGAGATGCAGGGATTACTTTGATAAGCTAAGGCTAGTCCAAGCACTAGGAGTAGCAGTTTTGTTAGGCCTTCTTTGGTGGAAATCCAAGACAGGAACCGAGGCTCAGCTCAGAGATCAGATTGGTTTGATGTTCTACATCTGCATTTTCTGGACATCCTCATCAATATTTGGAGCCGTATACGTCTTCCCTTTCGAAAAAATCTATCTGGTGAAAGAAAGGAAAGCAGATATGTACAGATTAAGCGTGTACTATGTGTGCAGCACCATGTGTGACATGGTGGCACATGTGGTCTATCCAACCATTTTCATGGTCATTCTCTACTTCATGGCTGGCTTCAAGAGAACAGTCTCTTGCTTCTTCTTGACCCTATTTGGGATACTACTGATAGCCATCACAAGCCAAGGGGCAGGAGAGCTCTTTGGTGCTGCAGTTTTGAGTATAAAAAGGGCTGGGATGATTGCTTCACTAGTACTAATGCTGTTTCTTCTAACAGGAGGCTACTATGTCCAGCACATTCCTCAGTTTATGCAGTGGTTGAAGTACATATCATTCATGTACTATGGGTTCAGGCTTATGTTGAAAGTGCAGTACTCTGGAGAACAACTGTATGAGTGTGGGAGCAGAGGAGGATGCAGGACTCTGCAGAGCTCCCCTTCATTCGACACTGTGAACTTGAATGGTGGCCTGAAAGAGGTCTGGGTTCTACTGGCAATGGCGGTTGGTTACCGGTTTTTTGCTTACCTTTGCCTCCGGAGAAGAATTGATGTATGCCATCTTTGA 2061 0.4449 MDMGKQDEIEAMALSPPSMSSMHIAGSNGFGHNIDFMSQAYIRNRNSEIDIEDDSFRTHQDHPLPIFLKFEDVEYGVRNNAASRNPVKAVVSRVASQLSMEQDNYKRILKGITGSIGPGEILGLMGPSGSGKTTLLKIIGGRLHENVKGTITYNDIPYNPALKRRIGFVTQDDVLLPQLTVEETLVFAAFLRLPSNMSRKQKYARVEMIVKELGLERCRHTKVGGGFVKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANRLLQILQGVAKAGRTIITTIHQPSSRMFHMFNKILLIAEGYPVYYGKARESMDYFSSLRFVPEIAMNPAEFLLDLATGQVNDISIPQDLQAPQVPPESERDVVKYLQVKYKTELEPKEKEENHWATKIPEHLQLAIQVKKDWTMSWWEQFLILTRRTFRERCRDYFDKLRLVQALGVAVLLGLLWWKSKTGTEAQLRDQIGLMFYICIFWTSSSIFGAVYVFPFEKIYLVKERKADMYRLSVYYVCSTMCDMVAHVVYPTIFMVILYFMAGFKRTVSCFFLTLFGILLIAITSQGAGELFGAAVLSIKRAGMIASLVLMLFLLTGGYYVQHIPQFMQWLKYISFMYYGFRLMLKVQYSGEQLYECGSRGGCRTLQSSPSFDTVNLNGGLKEVWVLLAMAVGYRFFAYLCLRRRIDVCHL* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0815 686 Gene3D - 94 326 IPR027417 -
Vvi19g0815 686 SMART AAA_5 118 309 IPR003593 GO:0016887
Vvi19g0815 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 324 IPR027417 -
Vvi19g0815 686 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 53 674 - -
Vvi19g0815 686 FunFam ABC transporter G family member 22 96 325 - -
Vvi19g0815 686 Pfam ABC transporter 109 259 IPR003439 GO:0005524
Vvi19g0815 686 Pfam ABC-2 type transporter 415 624 IPR013525 GO:0016020|GO:0140359
Vvi19g0815 686 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 68 331 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0815 Vvi-Chr19 9060557 9063661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0815 119 301 Calmodulin-binding Proteins AT2G36910 29.787 1.04e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0815 K05681 - vvi:100242992 1348.18