Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0811 ATGGGTTCGAAATCGAAAAGCGATAATCCTCATACAGGCGATGGCGCGAGTCCCGGGAAGATTTTTATCGGAGGATTAGCGAAAGATACGACCTATGCGACATTTAATAAGCACTTTGGGAAATATGGAGACATAACTGACTCTGTGATTATGAAAGATCGGTACACGGGCCAGCCAAGGGGCTTTGGATTTATTACCTACGCTGATCCTTCAGTTGTTGACAGGGTTATTGAAGATACCCATGTCATTAATGGAAAGCAGGTCGAAATTAAAAGAACTATTCCAAAAGGCTCTGGACAGTCAAAGGATTTCAAAACAAAGAAGATCTTTGTTGGTGGAGTGCCATCAACAGTCACTGAAGATGAATTCAAGAATTTTTTCTCGAAGTATGGGAAAGTTGTGGAACACCAGATTATACGTGATCATGAAACCAACCGGTCTCGAGGCTTTGGATTTATAATATTTGACAGTGAGGAAGTTGTAGATGAAATGATATCCAAGGGAAATATGATTGATATGGCGGGTACTCAGGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACCTGCGCCTGCATATGGTAGCAACTCTAGGGCTCGTTCTTTCAGTGATGGCTTTGGTGGATTTGGCAGCTCATATGGGGGCTTTGACAGTGGGTTTGGCCCTGGGCCCTATAGGACTCCTGGAGGTGTTGGCGGTAGGCTTGGTGGATATGGTGGGTATGGTAGTAGTGGCAGTGAATTTGGCGGTGGTTACGGGGGTTTTGGCAGCAGTAGTTTAGGAGGTTACCGAGGTGAATCTTCCCTTGGTTATTCTAGTCGGTTTGGACCCTATGGTGGCGGGTTTAGTGGGGGTTATGGAGGAAGTGGTCTAGGTGGATATGGCCGAGGGGGTGAGGGCTATGGGAATTATGGCGGTTCAGGCTACAGTGGTGGTTATGACTCTGGTCCTGGAGCTAGTTATGGCGGAGCAGGTGGGCTGTATGGAAGGGGAGGCTATAGTGGCAGTAGTCGGTACCATCCCTATGCAAGGTAG 1047 0.4728 MGSKSKSDNPHTGDGASPGKIFIGGLAKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDRVIEDTHVINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGVPSTVTEDEFKNFFSKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDEMISKGNMIDMAGTQVEIKKAEPKKASNPPPAPAYGSNSRARSFSDGFGGFGSSYGGFDSGFGPGPYRTPGGVGGRLGGYGGYGSSGSEFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYGGGFSGGYGGSGLGGYGRGGEGYGNYGGSGYSGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR* 349
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0811 348 MobiDBLite consensus disorder prediction 1 20 - -
Vvi19g0811 348 SUPERFAMILY RNA-binding domain, RBD 14 99 IPR035979 GO:0003676
Vvi19g0811 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 172 IPR000504 GO:0003723
Vvi19g0811 348 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 88 IPR000504 GO:0003723
Vvi19g0811 348 SUPERFAMILY RNA-binding domain, RBD 104 214 IPR035979 GO:0003676
Vvi19g0811 348 SMART rrm1_1 108 181 IPR000504 GO:0003723
Vvi19g0811 348 SMART rrm1_1 20 91 IPR000504 GO:0003723
Vvi19g0811 348 Gene3D - 99 218 IPR012677 -
Vvi19g0811 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 95 IPR000504 GO:0003723
Vvi19g0811 348 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Vvi19g0811 348 MobiDBLite consensus disorder prediction 182 202 - -
Vvi19g0811 348 Gene3D - 19 98 IPR012677 -
Vvi19g0811 348 FunFam Heterogeneous nuclear ribonucleoprotein 1 18 99 - -
Vvi19g0811 348 FunFam Heterogeneous nuclear ribonucleoprotein 1 100 224 - -
Vvi19g0811 348 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 7 348 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi19g0811 Vvi-Chr19 9026958 9029804 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0811 21 182 Eukaryotic Initiation Factors Gene Family AT4G34110 26.111 7.75e-13 67.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0811 K12741 - vvi:100265210 464.151