Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi19g0811 | ATGGGTTCGAAATCGAAAAGCGATAATCCTCATACAGGCGATGGCGCGAGTCCCGGGAAGATTTTTATCGGAGGATTAGCGAAAGATACGACCTATGCGACATTTAATAAGCACTTTGGGAAATATGGAGACATAACTGACTCTGTGATTATGAAAGATCGGTACACGGGCCAGCCAAGGGGCTTTGGATTTATTACCTACGCTGATCCTTCAGTTGTTGACAGGGTTATTGAAGATACCCATGTCATTAATGGAAAGCAGGTCGAAATTAAAAGAACTATTCCAAAAGGCTCTGGACAGTCAAAGGATTTCAAAACAAAGAAGATCTTTGTTGGTGGAGTGCCATCAACAGTCACTGAAGATGAATTCAAGAATTTTTTCTCGAAGTATGGGAAAGTTGTGGAACACCAGATTATACGTGATCATGAAACCAACCGGTCTCGAGGCTTTGGATTTATAATATTTGACAGTGAGGAAGTTGTAGATGAAATGATATCCAAGGGAAATATGATTGATATGGCGGGTACTCAGGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAACCCACCACCTGCGCCTGCATATGGTAGCAACTCTAGGGCTCGTTCTTTCAGTGATGGCTTTGGTGGATTTGGCAGCTCATATGGGGGCTTTGACAGTGGGTTTGGCCCTGGGCCCTATAGGACTCCTGGAGGTGTTGGCGGTAGGCTTGGTGGATATGGTGGGTATGGTAGTAGTGGCAGTGAATTTGGCGGTGGTTACGGGGGTTTTGGCAGCAGTAGTTTAGGAGGTTACCGAGGTGAATCTTCCCTTGGTTATTCTAGTCGGTTTGGACCCTATGGTGGCGGGTTTAGTGGGGGTTATGGAGGAAGTGGTCTAGGTGGATATGGCCGAGGGGGTGAGGGCTATGGGAATTATGGCGGTTCAGGCTACAGTGGTGGTTATGACTCTGGTCCTGGAGCTAGTTATGGCGGAGCAGGTGGGCTGTATGGAAGGGGAGGCTATAGTGGCAGTAGTCGGTACCATCCCTATGCAAGGTAG | 1047 | 0.4728 | MGSKSKSDNPHTGDGASPGKIFIGGLAKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDRVIEDTHVINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGVPSTVTEDEFKNFFSKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDEMISKGNMIDMAGTQVEIKKAEPKKASNPPPAPAYGSNSRARSFSDGFGGFGSSYGGFDSGFGPGPYRTPGGVGGRLGGYGGYGSSGSEFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYGGGFSGGYGGSGLGGYGRGGEGYGNYGGSGYSGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR* | 349 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi19g0811 | 348 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Vvi19g0811 | 348 | SUPERFAMILY | RNA-binding domain, RBD | 14 | 99 | IPR035979 | GO:0003676 | |
Vvi19g0811 | 348 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 109 | 172 | IPR000504 | GO:0003723 | |
Vvi19g0811 | 348 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 21 | 88 | IPR000504 | GO:0003723 | |
Vvi19g0811 | 348 | SUPERFAMILY | RNA-binding domain, RBD | 104 | 214 | IPR035979 | GO:0003676 | |
Vvi19g0811 | 348 | SMART | rrm1_1 | 108 | 181 | IPR000504 | GO:0003723 | |
Vvi19g0811 | 348 | SMART | rrm1_1 | 20 | 91 | IPR000504 | GO:0003723 | |
Vvi19g0811 | 348 | Gene3D | - | 99 | 218 | IPR012677 | - | |
Vvi19g0811 | 348 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 19 | 95 | IPR000504 | GO:0003723 | |
Vvi19g0811 | 348 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 107 | 185 | IPR000504 | GO:0003723 | |
Vvi19g0811 | 348 | MobiDBLite | consensus disorder prediction | 182 | 202 | - | - | |
Vvi19g0811 | 348 | Gene3D | - | 19 | 98 | IPR012677 | - | |
Vvi19g0811 | 348 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 18 | 99 | - | - | |
Vvi19g0811 | 348 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 100 | 224 | - | - | |
Vvi19g0811 | 348 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN | 7 | 348 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi19g0811 | Vvi-Chr19 | 9026958 | 9029804 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi19g0811 | 21 | 182 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 26.111 | 7.75e-13 | 67.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi19g0811 | K12741 | - | vvi:100265210 | 464.151 |