Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0797 ATGTGCAGAGGTAGCACAAGCAGTGACGTGAGCGATGAAAGTACTTGTAGCAGCTTAAGTAGCAGTATCAGCAAACCTCATAAAGCTAATGATTCAAGGTGGGAAGCCATCCAGGTTGTCCGTGCAAAAGATGGGGCCTTGGGTTTAAACCATTTCAGACTTCTGAAGAGGTTGGGCTGTGGAGATATTGGAAGTGTCTATCTTTCAGAATTGAAGGGTACCAAGTGTTATTTTGCGATGAAGGTCATGGACAAAGGGTCTCTAGCAAGTCGTAAGAAGCTGCTTCGGGCTCAGACAGAAAGAGAGATTCTCCAATCCTTGGACCATCCCTTCCTTCCAACCTTATACACCCATTTTGAGACCGAAAAATTCTCTTGTTTGGTGATGGAGTTCTGCCCAGGAGGTGATTTACACACACTTAGGCAGAGGCAACCTGGGAAGCATTTTTCCGAGCAAGCTGTAAAGTTCTATGTAGCAGAGGTTCTTCTTGCTCTTGAATACCTTCACATGCTTGGGATTGTTTATCGTGACCTGAAGCCAGAGAATGTCCTTGTGAGGGAAGACGGGCACATTATGCTTTCAGATTTTGACCTCTCTCTGCGGTGCACTGTCAGCCCAACACTGGTCAAGTCCTCTTCTTTTGACACTGAACCCTTACGAAGGAACCCAGTCTATTGTGTCCAACCTACTTGCATTGAACCCTCTTGTATTCAGCCATCCTGTGTGGCCCCAACAACATGTTTTTCCCCTCGCCTATTTTCAAGTAAATCCAAAAAGGACCGGAAACCCAAGAATGAAATTGGAAACCAAGTGAGCCCATTGCCAGAGCTCATTGCAGAGCCAACTGGGGCTCGCTCAATGTCATTTGTGGGGACGCACGAGTACCTTGCACCTGAAATCATCAAGGGTGAAGGTCATGGCAGTGCAGTGGACTGGTGGACCTTTGGAATCTTTCTATATGAGCTACTCTTTGGTAAGACTCCTTTTAAAGGATCCGGGAATCGAGCAACCCTCTTCAATGTTGTGGGTCAGCCACTGCGGTTCCCGGAGTCACCAGTGGTCAGTTTTTCAGCAAGGGATCTGATAAGGGGCTTGCTGGTAAAGGAGCCACAGCACAGATTGGCATATAAACGAGGGGCAACAGAAATCAAACAACACCCCTTCTTCGAGGGTGTCAACTGGGCTTTGATTCGATGCGCGAGCCCTCCCGAGATCCCAAAGCCAGTTGAGATTGAGCGAGTGCCAGCTCCAGCAGCCTCAAGCAGTGAAAAAGCAGCAGCTGCCATGGCGGGGCCTGATCAGAAAAGTTGTGATAATTATCTGGAATTTGATTTCTTTTAA 1341 0.4765 MCRGSTSSDVSDESTCSSLSSSISKPHKANDSRWEAIQVVRAKDGALGLNHFRLLKRLGCGDIGSVYLSELKGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFSEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSSFDTEPLRRNPVYCVQPTCIEPSCIQPSCVAPTTCFSPRLFSSKSKKDRKPKNEIGNQVSPLPELIAEPTGARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFSARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEIPKPVEIERVPAPAASSSEKAAAAMAGPDQKSCDNYLEFDFF* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0797 446 Gene3D Phosphorylase Kinase; domain 1 50 135 - -
Vvi19g0797 446 Pfam Protein kinase domain 286 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0797 446 Pfam Protein kinase domain 53 205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0797 446 ProSiteProfiles Protein kinase domain profile. 52 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0797 446 SUPERFAMILY Protein kinase-like (PK-like) 26 414 IPR011009 -
Vvi19g0797 446 SMART serkin_6 52 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g0797 446 Gene3D Transferase(Phosphotransferase) domain 1 285 407 - -
Vvi19g0797 446 PANTHER FLIPPASE KINASE 1-RELATED 3 413 - -
Vvi19g0797 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Vvi19g0797 446 FunFam serine/threonine-protein kinase D6PK-like 136 203 - -
Vvi19g0797 446 CDD STKc_phototropin_like 51 412 - -
Vvi19g0797 446 FunFam Serine/threonine-protein kinase D6PK-like 50 135 - -
Vvi19g0797 446 MobiDBLite consensus disorder prediction 1 27 - -
Vvi19g0797 446 Gene3D Transferase(Phosphotransferase) domain 1 136 205 - -
Vvi19g0797 446 FunFam Serine/threonine-protein kinase AGC1-7 282 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0797 Vvi-Chr19 8904774 8909430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0797 1 446 AGC Kinase Gene Family AT5G47750 85.938 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vvi19g0797 Pkinase 1.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0797 K08286 - vvi:100258297 866.685