LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi19g0783	ATGGATTCAAGAAAGCTTCTTGTTTTCTTGCTTTTCACGTTCTTCAATTTCTCCGACCCACCTCTAGTGGTATCAGCCCAGAATGTGGATTTTGATTTCTCCTCGTTCACTCTCCGAAACTTCACTCTCCTCGGGGACTCCTACCTCCGAAACGGCGTAATTGGCCTCACCCGAAACCTCGGGGTCCCCTCCTCCAGCTCCGGAACCGTTATCTGCAACGCCCCGATCGCATTTTTCGATTCTGAATCGAATACCACTGCCTCTTTCTCCACAAGATTCTCCTTCTCTATCACCAATGTCAATCCGAGCTCCTACGGCGACGGATTGGCCTTTTTTCTTTCGCCTGAAAATGAGACTCTGGGCAGCCCTGGAGGCTATCTGGGTCTTGTGAATTCCTCCCAATTAACCAAGAACAGGTTTGTTGCAGTGGAATTCGATACCCGGCTCGATCCGCATTTCAATGATCCCAATGACAACCATGTGGGGTTGGATATTGACAGCTTGAATTCAATGAAGACTGCCGATCCAGTCTTGGATGAGAATATTGACCTGAAAAGTGGAAAGTCGATCACGGCTTGGATTGAGTACAAGAATGATCAGATGAAGCTCAAGGTGTTCTTGAGTTCTTCGAGGTCTAAGCCTGAAAGGCCAGTCCTGATTGTGGATATTGACCTTTCTGAGTATCTGAAGGAGTTGAAGTATGTGGGGTTTTCAGCCTCTACAGAGGGGAGCACCGAGCTGCATCTGATTGAGAATTGGAGCTTCAAGACTTTCGGGTTGGTCCCTGCACCGCCACGGCTGCATTTTCCGCCTCACAACGTCTCAGATAATACAGTGATGATACCCCCACCAAGTGCGGTATCTGATTCAGGGAATAAAGGCCATAAGAGGCTTGGTTTGGGGTTCGGGATTGCTGGGCCAGTGTTCTTTTGCATAGTTCTTTCGGTATTTGGTTATGTTTCCATGAAGAAATGGAGGGGGATGAGATGGGAGAAGAGCTTCAAAGCAGATATTCTTGCTGGGCCAAGAGAGTTTAGTTACAAAGAGCTGAAGGGGGCGACAAAAGGATTTCATTCTAGCAGGATCATTGGCAATGGTGCATTCGGTACTGTTTACAAGGCATTTTTTATCACAACAGGGACCATTTCTGCAGTGAAAAGATCAAAGCATTCTCATGAAGGTAAAAGCGAGTTCCTTGCTGAGTTATCAATTATAGCTTGTTTAAGGCATAAGAATTTAGTTCAGCTTCAAGGTTGGTGTGTTGAGAAGGGTGATCTATTGCTTGTTTATGAATTTATGCCTAATGGCAGCCTTGATAAGATGCTGTATCAAGAGTCCGAGGAAGGAACCTTACTGAAATGGTCTCATAGATACAACATTATTGTTGGGATGGCATCTGTTCTCACATACCTGCATCAGGAATGTGAGCAGCAAGTCATCCACAGAGACATAAAAACCAGTAACATAATGCTTGATGGAAACTTCAATGCTAGGCTTGGAGATTTCGGGTTGGCAAGGCTCATGGATCATGATAAAAGTCCAGTTTCAACTCTGACTGCTGGAACTATGGGATACCTTGCCCCGGAGTATCTGCAGTATGGGAAAGCTACTGAGAAAACAGATGTTTTCAGCTATGGTGTGGTTATACTTGAAGTGGCTTGTGGAAGGAGGCCAATTGAGAAAGACACAGATAGTCAGAAAATGATGAATTTGGTTGATTGGGTTTGGGGATTGTATTCTCAAGGCAACATCCTTGAAGCTGCTGACAAACGGTTGAATAGGGAGTTCAAGGAGGAAGAAATGAGAAAGCTTTTACTTGTGGGCTTGAGCTGTGCAAACCCAGATTGTAATGTGAGGCCTTCTATGAGGAGAGTCCTTCAGATCCTTAATGATGAGGCAGAGCCTTTACTTGTCCCCAGGATGAAACCAAGTCTCACTTTCTCATTAAGCTTGCCTCTCAGTATCGATGACATTGTTTCAGATGGTGAAGATCATCGTAAGTCACTTGACTCCATGTGTGAGATCAAGATCTAG	2034	0.4518	MDSRKLLVFLLFTFFNFSDPPLVVSAQNVDFDFSSFTLRNFTLLGDSYLRNGVIGLTRNLGVPSSSSGTVICNAPIAFFDSESNTTASFSTRFSFSITNVNPSSYGDGLAFFLSPENETLGSPGGYLGLVNSSQLTKNRFVAVEFDTRLDPHFNDPNDNHVGLDIDSLNSMKTADPVLDENIDLKSGKSITAWIEYKNDQMKLKVFLSSSRSKPERPVLIVDIDLSEYLKELKYVGFSASTEGSTELHLIENWSFKTFGLVPAPPRLHFPPHNVSDNTVMIPPPSAVSDSGNKGHKRLGLGFGIAGPVFFCIVLSVFGYVSMKKWRGMRWEKSFKADILAGPREFSYKELKGATKGFHSSRIIGNGAFGTVYKAFFITTGTISAVKRSKHSHEGKSEFLAELSIIACLRHKNLVQLQGWCVEKGDLLLVYEFMPNGSLDKMLYQESEEGTLLKWSHRYNIIVGMASVLTYLHQECEQQVIHRDIKTSNIMLDGNFNARLGDFGLARLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATEKTDVFSYGVVILEVACGRRPIEKDTDSQKMMNLVDWVWGLYSQGNILEAADKRLNREFKEEEMRKLLLVGLSCANPDCNVRPSMRRVLQILNDEAEPLLVPRMKPSLTFSLSLPLSIDDIVSDGEDHRKSLDSMCEIKI*	678

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi19g0783	677	Gene3D	Transferase(Phosphotransferase) domain 1	433	646	-	-
	Vvi19g0783	677	SUPERFAMILY	Protein kinase-like (PK-like)	340	651	IPR011009	-
	Vvi19g0783	677	ProSitePatterns	Legume lectins beta-chain signature.	141	147	IPR019825	-
	Vvi19g0783	677	SMART	serkin_6	357	637	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi19g0783	677	CDD	lectin_legume_LecRK_Arcelin_ConA	29	259	IPR001220	GO:0030246
	Vvi19g0783	677	PANTHER	-	52	639	-	-
	Vvi19g0783	677	SUPERFAMILY	Concanavalin A-like lectins/glucanases	27	265	IPR013320	-
	Vvi19g0783	677	Pfam	Legume lectin domain	29	257	IPR001220	GO:0030246
	Vvi19g0783	677	ProSitePatterns	Protein kinases ATP-binding region signature.	363	386	IPR017441	GO:0005524
	Vvi19g0783	677	Gene3D	-	26	260	-	-
	Vvi19g0783	677	ProSiteProfiles	Protein kinase domain profile.	357	637	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi19g0783	677	CDD	STKc_IRAK	363	630	-	-
	Vvi19g0783	677	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	479	491	IPR008271	GO:0004672\|GO:0006468
	Vvi19g0783	677	FunFam	L-type lectin-domain containing receptor kinase VIII.1	433	647	-	-
	Vvi19g0783	677	FunFam	L-type lectin-domain containing receptor kinase VIII.1	321	432	-	-
	Vvi19g0783	677	FunFam	L-type lectin-domain containing receptor kinase VIII.1	27	268	-	-
	Vvi19g0783	677	Pfam	Protein kinase domain	357	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi19g0783	677	Gene3D	Phosphorylase Kinase; domain 1	321	432	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi19g0783	Vvi-Chr19	8704992	8707025	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi19g0783	3	664	Receptor kinase-like Gene Family	AT5G55830	67.905	0.0	921

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vvi19g0783		Pkinase	1.6e-52	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi19g0783	-		-	vvi:100241177	1347.41