Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0780 ATGGAGACTGATGGTGATCAGTTTCATGTCTACCGCAGAAAGTTCCCACCAAACTCATCCAACTCTGCTCTCACTTTGGGTTCCCGCTCCTCCAACCCCATCAACACCATGGCCGGCGAGGGCCAACAGCAGGGTCGGCGAGAGCAGGAGCATTATATGCCCATGGCACATTTGACACGCGTCATGCGTCGTGTCCTCCCTGCCCATGCTCAGATCTCCGACCAGGCAAAGGAAAGCATCCAGGAATGCGTTTGCGAGTTCATTAGCTTCATAACTAGTGAGGCTAATGACAGGAGCCACCATGAGCTGCGGAAAACCATCACCGGTGAGGACATCATAGCTGCCATGGGGAAGCTTGGGTTTGACGACTACATTGAGCCCCTCACTCTGTACCTACATCGCTACCGCCAGGCAGAGAATGAGCGTGACGGCCGTCTGCCTCTTGGGGGTGCCATGGACTATGGTTCCCTTGGTGCCACACTGAGTTATGGGCCACCACTCCCGCCGCCGCCGCCCCAGACTTTGAACATGGGGAACCAAGAGGGGTTGCAAGATGCTGCTGCTATAGTTACTCATAACTACTTCGAGGAAGAGGCGGGTGGTGCCGGCGGTAGCACCTCTTCTAGGTACCCTCGCGAAGACAAGTAA 648 0.5571 METDGDQFHVYRRKFPPNSSNSALTLGSRSSNPINTMAGEGQQQGRREQEHYMPMAHLTRVMRRVLPAHAQISDQAKESIQECVCEFISFITSEANDRSHHELRKTITGEDIIAAMGKLGFDDYIEPLTLYLHRYRQAENERDGRLPLGGAMDYGSLGATLSYGPPLPPPPPQTLNMGNQEGLQDAAAIVTHNYFEEEAGGAGGSTSSRYPREDK* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0780 215 PRINTS CCAAT-binding transcription factor subunit A signature 118 136 - -
Vvi19g0780 215 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Vvi19g0780 215 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Vvi19g0780 215 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 35 179 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi19g0780 215 Gene3D Histone, subunit A 39 146 IPR009072 GO:0046982
Vvi19g0780 215 MobiDBLite consensus disorder prediction 1 49 - -
Vvi19g0780 215 MobiDBLite consensus disorder prediction 14 43 - -
Vvi19g0780 215 MobiDBLite consensus disorder prediction 195 215 - -
Vvi19g0780 215 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 53 116 IPR003958 -
Vvi19g0780 215 SUPERFAMILY Histone-fold 49 145 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0780 Vvi-Chr19 8672345 8673689 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0780 31 142 CCAAT-HAP3 Transcription Factor Family AT5G47670 62.500 1.68e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vvi19g0780 CBFD_NFYB_HMF 3.6e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0780 K08065 - vvi:100251442 415.616