Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0779 ATGGAGCGTGATGATGATCAGTTTCATGGATATCGCAGAAAGATCCCAGAAAACTCATCCACCTCTGCTCTGAATCCTGGCGCCACCTCTTCTAATCCCATCGAAACCACCGCCGGCGTGGGTCAGAAGCAGCTGCCCATGGAGCAGTACATGCCCATAGCAAACCTGACGCGCGTCATGCGCCGTGTCCTACCTGCTCATGCTAAGATCTCCGACGATGCCAAGGAGACCGTCCAGGAATGTGTCTCCGAGTTCATCAGCTTCATAACTAGCGAGGCTAATGACAGGTGCCACCATGAGCTGCGGAAAACCATCACCGCTGAGGATGTCATCGCCGCCATGAGCAAACTGGGATTTGACGACTACATTGACCCTCTCACTCTCTACCTTCACCGCTATCGCGAGTCGGAAAACGAACGTGACCGTATGCCTCTGAGGCGTGGTAGGGAGTATGGTTCGCTGGGGGCCGCAGCAAATTATGGGCCACCGCCACCGCCATGGACGACATTGCACATTGGGAGCCAACAGGGGCTGTATGACGCTGCACCCATAGTTACACGCGACTACTTCAAGGAAGGGTCGAGTGCTGGCGGCAGCACCTCTTCTCGCCTTCCTCCTGAGTACAAGTAA 630 0.554 MERDDDQFHGYRRKIPENSSTSALNPGATSSNPIETTAGVGQKQLPMEQYMPIANLTRVMRRVLPAHAKISDDAKETVQECVSEFISFITSEANDRCHHELRKTITAEDVIAAMSKLGFDDYIDPLTLYLHRYRESENERDRMPLRRGREYGSLGAAANYGPPPPPWTTLHIGSQQGLYDAAPIVTRDYFKEGSSAGGSTSSRLPPEYK* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0779 209 Gene3D Histone, subunit A 42 152 IPR009072 GO:0046982
Vvi19g0779 209 MobiDBLite consensus disorder prediction 14 43 - -
Vvi19g0779 209 MobiDBLite consensus disorder prediction 1 43 - -
Vvi19g0779 209 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Vvi19g0779 209 PRINTS CCAAT-binding transcription factor subunit A signature 116 134 - -
Vvi19g0779 209 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Vvi19g0779 209 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 43 141 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi19g0779 209 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 51 114 IPR003958 -
Vvi19g0779 209 ProSitePatterns NF-YB/HAP3 subunit signature. 81 97 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vvi19g0779 209 SUPERFAMILY Histone-fold 49 144 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0779 Vvi-Chr19 8666997 8668364 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0779 1 140 CCAAT-HAP3 Transcription Factor Family AT5G47670 57.692 2.72e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vvi19g0779 CBFD_NFYB_HMF 1e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0779 K08065 - vvi:100256650 424.091