Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0772 ATGTCAACCTTGTCACTCTCCTTCCTTGTGATTCTCTTATATGTCTCTACTGCATACTCTGCACGTCTCCTACCGCTAGAATCAGAAGCAACAACATGGAGCTCAAGAGGAGGAAGTTTGAGAACGCAGCTTGATGAAGTATCATGTAGAACTGGGAACCCCATTGATGATTGCTGGAGGTGTGACCCTGACTGGGAAACCAACAGAAAGATGCTAGCAGACTGTGGTGTAGGGTTCGGGCGCAATGCCATTGGCGGTCGAGATGGTGAGCTTTACGTTGTCACTGATTCAGGCAACGACGACCCTGCCAACCCAATCCCAGGCACACTCAGACATGCTGTCATCCAATACGTGCCGCTGTGGATAGTGTTTGATCATGACATGGTCATCAACCTGAAGGAAGAGCTCATCATGAACTCTTACAAGACAATAGATGGGAGGGGATTCAACATCCAAATAGCCAATGGGGCCTGCATAACCATACAAAACGTGAGCAACATCATCATACATGGTGTCTACATACATGGTTGTGTGCCAACTGGGAACGCCATCGTGAGGGACAGGCCGGATCATTATGGGATGAGAGGGATGTCAGATGGGGATGGGATATCGATATTTGGAGGAACGGATATATGGATTGATCATTGTACCCTAGCTGATTGCTACGACGGACTCATTGATGCAGTGTATGGATCTAAATCAATAACCATCTCAAACAACTACATGTTGAATCACAATGAAGCCATGCTCATGGGGCATAGTGATGACTTCCTTGCTGACAAGAATATGCAGGTCACAATTGCCTTCAATTACTTTGGGGAAGGCCTAGTTCAAAGAATGCCCAGACATGGGTATTTCCATATTGTAAATAATGTATACACTGATTGGGAAATGTATGCAATTGGTGGAAGTGCCAATCCAACAATCAACAGCCAAGGAAATGTCTTCATTGCAAGGGATGACAATTCTACCAAGGAGGTGACCAAACGTGAAAGCCTCTTGGGATATGAAGAGTGGAAGGACTGGAATTGGAGATCAGATGGAGATTTGATGTTGAATGGTGCTTACTTTAGAGCTTCTGGAGAAGAAGCACCTGCAAGTTACTCAAAAGCATCGAGCATGGTAGCAAGACCAGCTTCACTTTTAACATATATCACTGCATCTGCTGGAGTTCTCAATTGTAAGATAGGCTATGCATGCTAA 1203 0.4514 MSTLSLSFLVILLYVSTAYSARLLPLESEATTWSSRGGSLRTQLDEVSCRTGNPIDDCWRCDPDWETNRKMLADCGVGFGRNAIGGRDGELYVVTDSGNDDPANPIPGTLRHAVIQYVPLWIVFDHDMVINLKEELIMNSYKTIDGRGFNIQIANGACITIQNVSNIIIHGVYIHGCVPTGNAIVRDRPDHYGMRGMSDGDGISIFGGTDIWIDHCTLADCYDGLIDAVYGSKSITISNNYMLNHNEAMLMGHSDDFLADKNMQVTIAFNYFGEGLVQRMPRHGYFHIVNNVYTDWEMYAIGGSANPTINSQGNVFIARDDNSTKEVTKRESLLGYEEWKDWNWRSDGDLMLNGAYFRASGEEAPASYSKASSMVARPASLLTYITASAGVLNCKIGYAC* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0772 400 PRINTS Pollen allergen Amb family signature 371 394 IPR018082 -
Vvi19g0772 400 PRINTS Pollen allergen Amb family signature 75 92 IPR018082 -
Vvi19g0772 400 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Vvi19g0772 400 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Vvi19g0772 400 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Vvi19g0772 400 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Vvi19g0772 400 PRINTS Pollen allergen Amb family signature 342 366 IPR018082 -
Vvi19g0772 400 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Vvi19g0772 400 PANTHER PECTATE LYASE 18-RELATED 36 397 IPR045032 GO:0030570
Vvi19g0772 400 SUPERFAMILY Pectin lyase-like 28 394 IPR011050 -
Vvi19g0772 400 SMART amb_all 127 322 IPR002022 -
Vvi19g0772 400 Gene3D - 52 393 IPR012334 -
Vvi19g0772 400 Pfam Pectate lyase 134 316 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0772 Vvi-Chr19 8585483 8587296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0772 34 400 Polysaccharide Lyase AT4G13710 64.770 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0772 K01728 - vvi:100249765 828.55