Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0765 ATGGCGGATTCCGACAACGACTCCGGCGGCCATAACAACAACGCGGGCAGCGAGCTTTCGCCGCGAGAGCAGGACAGGTTCTTGCCGATTGCAAACGTGAGCCGGATCATGAAGAAGGCCCTTCCGGCGAATGCGAAGATCTCCAAGGACGCGAAGGAGACAGTGCAGGAGTGCGTGTCGGAGTTCATCAGCTTCATCACCGGAGAAGCGTCGGACAAGTGCCAGAGAGAGAAGCGGAAGACGATCAACGGCGACGACCTGCTCTGGGCGATGACGACTCTAGGGTTCGAGGACTACGTGGATCCGCTGAAGATTTACCTTCACAGGTTTCGCGAGATGGAAGGCGAGAAGACCTCCATGGGACGCCAAGGGGAGAAGGATGGTCCCAGCGCTGCTGGGGGCAATGGCAGCGTCGTGAATCCAGCGAACACCGGTAGTGGTGGTTTCGGGGAGACTGGGATGTATGGTGCGATACCATCAACGATGATGATGATGGGCCATCATCAGCATCAGGGGCACGTGTACGGGTCCAGCGCATACCATCCGATGGCAGCGGCCGGTGCCAATTTCGGGTCGGGTAAGGCCAATTCGGGTCATCCCGGGTCCGGACCCTCTGCGGGCAGACCGAGATAG 633 0.594 MADSDNDSGGHNNNAGSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKIYLHRFREMEGEKTSMGRQGEKDGPSAAGGNGSVVNPANTGSGGFGETGMYGAIPSTMMMMGHHQHQGHVYGSSAYHPMAAAGANFGSGKANSGHPGSGPSAGRPR* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0765 210 MobiDBLite consensus disorder prediction 1 20 - -
Vvi19g0765 210 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 8 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi19g0765 210 SUPERFAMILY Histone-fold 24 130 IPR009072 GO:0046982
Vvi19g0765 210 MobiDBLite consensus disorder prediction 115 149 - -
Vvi19g0765 210 FunFam Nuclear transcription factor Y subunit B-3 16 138 - -
Vvi19g0765 210 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Vvi19g0765 210 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Vvi19g0765 210 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Vvi19g0765 210 Gene3D Histone, subunit A 17 135 IPR009072 GO:0046982
Vvi19g0765 210 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Vvi19g0765 210 MobiDBLite consensus disorder prediction 186 210 - -
Vvi19g0765 210 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vvi19g0765 210 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0765 Vvi-Chr19 8458936 8459568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0765 1 127 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.156 1.24e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vvi19g0765 CBFD_NFYB_HMF 2.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0765 K08065 - vvi:100251431 418.313