Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0756 ATGGATCATGGTGCTGCAGCAAAGCCCTCAGTATTAGGATTGTTAAATCCTTCACCGCAAACCAATCAAAAAGCTTCCCTCAAGAGAAAACGATACCGCCGGTGTAGAAGTGCCCCGGTAGCAGCATGTACGCATCCACATCCTGCTGGCCCTGACTCACTGCACCGCTCTCAAATCATTAGCCGTAAACTCCACCCAAATGTTGTTAAAGTGATCGCTGTCTTGGCCCTTTACCTTGGTGCTGGCACTGTAATCTTCTACCTCACCAGGCATCACATGAGGGGGAAGAAAACAAATGGAGTTGTAGATGCTGTCTATTTCTGTATTGTAACAATGAGCACAGTCGGGTATGGAGACATCGTCCCGAACAGCGTTGCTACAAAGCTACTTGCCTGTGCTTTTGTCTTCATAGGGATGGCTCTCATAGCACTAGGCTTGAGCAAAGCCGCAGACTATCTGGTAGAGAAGCAGGAAATGTTACTAGTTAGAGCCTTGCATATGAACCAAAATGTTGGTACGGTTGAAATGATGAGGGAGATGGAAACCAACAGAGTGAAAAACAAATGTCTAGTGATGTCTCTTATTCTTGTGGTGGTTATCATTGCTGGGACAGTCTTTCTAGCTGAAGTGGAGGGAATGAGCTTCGTTGATGCATTTTATTGTGTTTGTTGTACCATCACAACCCTGGGCTATGGAGATGTGAGCTTCACCACCCAAGGAGGGAGGGTTTTCGCGATATTTTGGATATTGACCGGTAGTATTTCTTTAGCTCAGTTGCTCTTCTACATTGCTGAGCTTAATACCGAGAGAAGACAGAAGAAATTAGTGAAGTGGGTGCTTGGCCGGCAGATGACAAAACTAGATTTGGAGGCTGCTGATCTTGACGAAGATGGGGTTGTCGATGTGTCTGACTTCATCATCTATAAGCTCAAAGAGATGGGGAAGATCAGCCAAAAAGATATTGCAATTGTAATGAAGGAGTTTCAAGAACTAGACGTCGACCAATCAGGAACATTGTCTAACACTGACGTACAGCTTGCTCAATTATCTTAA 1053 0.4492 MDHGAAAKPSVLGLLNPSPQTNQKASLKRKRYRRCRSAPVAACTHPHPAGPDSLHRSQIISRKLHPNVVKVIAVLALYLGAGTVIFYLTRHHMRGKKTNGVVDAVYFCIVTMSTVGYGDIVPNSVATKLLACAFVFIGMALIALGLSKAADYLVEKQEMLLVRALHMNQNVGTVEMMREMETNRVKNKCLVMSLILVVVIIAGTVFLAEVEGMSFVDAFYCVCCTITTLGYGDVSFTTQGGRVFAIFWILTGSISLAQLLFYIAELNTERRQKKLVKWVLGRQMTKLDLEAADLDEDGVVDVSDFIIYKLKEMGKISQKDIAIVMKEFQELDVDQSGTLSNTDVQLAQLS* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0756 350 Gene3D - 65 161 - -
Vvi19g0756 350 FunFam Two-pore potassium channel 1 169 277 - -
Vvi19g0756 350 Gene3D - 193 254 - -
Vvi19g0756 350 FunFam Calcium-activated outward-rectifying potassium channel 1 65 160 - -
Vvi19g0756 350 Pfam Ion channel 195 266 IPR013099 -
Vvi19g0756 350 Pfam Ion channel 74 154 IPR013099 -
Vvi19g0756 350 SUPERFAMILY Voltage-gated potassium channels 181 286 - -
Vvi19g0756 350 ProSitePatterns EF-hand calcium-binding domain. 332 344 IPR018247 -
Vvi19g0756 350 PRINTS Two pore domain K+ channel signature 227 236 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi19g0756 350 PRINTS Two pore domain K+ channel signature 110 138 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi19g0756 350 MobiDBLite consensus disorder prediction 1 26 - -
Vvi19g0756 350 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 66 321 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi19g0756 350 SUPERFAMILY EF-hand 285 345 IPR011992 -
Vvi19g0756 350 Gene3D - 311 345 - -
Vvi19g0756 350 Gene3D - 281 310 - -
Vvi19g0756 350 SUPERFAMILY Voltage-gated potassium channels 61 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0756 Vvi-Chr19 8316673 8317843 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0756 55 348 Ion Channels AT5G55630 61.017 3.88e-133 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0756 K05389 - vvi:100263526 670.233