Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0755 ATGGCCTGTGGTGGTGCGAATCAACATTCAATATCAGGACAGTTGAATCTTTCATCCCAAACCTATCAAAAAGCAGCTTCCAAGAGAAGAAGATACCGCCGCTGCAAAAGTGCCCCAGCAGTCGAATCTATTTCTCTACATAGTAACCACTCGACCTCAATTCAACATTCGGAATCCACTGTTCAAAAACACCACACAAGTTCTATTAAAGTAATCATCATCTTGGCCATTTACCTTGGTGTTGGCACTGTCTGCTTCTACCTCACCCGGCATCAGATGAAAGGAAAGAAAACCAATGGAGTTGTAGATGCTGTCTATTTCTGTATTGTAACAATGACCACGGTCGGATACGGAGACATCGTCCCGGACAGCGTAGCTACAAAACTGCTTGCCTGTGCTTTTGTCTTCACAGGCATGGCTCTTATAGCACTATGTCTGAGCAAAGCTGCAGACTATCTGGTAGAAAAGCAGGAAACATTGCTAGTCAGAGCTTTATACATGTATAAAGATGTCGGTATGGCTGAGATCTTAAAGGAGATGGAAACCAACAGAGTGAGATACAAATGTTTCATGGTTTTTCTTCTTCTTCTGGTAGTAATCATTGGTGGAACAGTGTTCCTATCTAAAGTGGAGGAGTTGAGCTTCATTGATTCATTTTATTGTGTTTGTTGTACAATCACAACCCTAGGGTATGGAGATGTGAGCTTCACCACCAAAGCAGGAAGGGCTTTTGCTGTATTTTGGATACTGACGGGAACTATTTCTTTAGCGCAGTTCTTCCTCTACCTTGCTGAGCTTAACACTGAAAGAAGGCAAAAGAAGTTGGTCAAGTGGGTTCTTGATAGGAAAATGACAAACGCAGATTTGGAGGTTGCTGATCTTGACGAGGATGGGGTTGTTGATGTTTCTGACTTCATCATCTATAAGCTGAAAGAGATGGGGAAGATCAGCGAAGAAGATGTTTCAATTGTAATGAAGGAGTTCGAAAAACTTGATATTGATCAGTCAGGAACATTGTCAGCCGTTGATATAACACTTGCTCAATCCTTTCAAGCTATTGGATGA 1065 0.4197 MACGGANQHSISGQLNLSSQTYQKAASKRRRYRRCKSAPAVESISLHSNHSTSIQHSESTVQKHHTSSIKVIIILAIYLGVGTVCFYLTRHQMKGKKTNGVVDAVYFCIVTMTTVGYGDIVPDSVATKLLACAFVFTGMALIALCLSKAADYLVEKQETLLVRALYMYKDVGMAEILKEMETNRVRYKCFMVFLLLLVVIIGGTVFLSKVEELSFIDSFYCVCCTITTLGYGDVSFTTKAGRAFAVFWILTGTISLAQFFLYLAELNTERRQKKLVKWVLDRKMTNADLEVADLDEDGVVDVSDFIIYKLKEMGKISEEDVSIVMKEFEKLDIDQSGTLSAVDITLAQSFQAIG* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0755 354 PRINTS Two pore domain K+ channel signature 227 236 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi19g0755 354 PRINTS Two pore domain K+ channel signature 110 138 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi19g0755 354 FunFam Two-pore potassium channel 1 169 277 - -
Vvi19g0755 354 SUPERFAMILY EF-hand 242 345 IPR011992 -
Vvi19g0755 354 Gene3D - 193 254 - -
Vvi19g0755 354 Gene3D - 62 160 - -
Vvi19g0755 354 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 64 322 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi19g0755 354 FunFam Calcium-activated outward-rectifying potassium channel 1 65 160 - -
Vvi19g0755 354 ProSitePatterns EF-hand calcium-binding domain. 293 305 IPR018247 -
Vvi19g0755 354 ProSitePatterns EF-hand calcium-binding domain. 332 344 IPR018247 -
Vvi19g0755 354 SUPERFAMILY Voltage-gated potassium channels 65 163 - -
Vvi19g0755 354 Pfam Ion channel 195 266 IPR013099 -
Vvi19g0755 354 Pfam Ion channel 73 154 IPR013099 -
Vvi19g0755 354 Gene3D - 255 350 - -
Vvi19g0755 354 SUPERFAMILY Voltage-gated potassium channels 162 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0755 Vvi-Chr19 8304202 8305387 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0755 70 353 Ion Channels AT5G55630 64.437 1.16e-136 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0755 K05389 - vvi:100246381 687.567