Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0754 ATGGCATCTGGTAGTGTGAAACAGCCCTTAATATCAAGATATTCAGGTCCTATATCTCGAACCAACCAGAAAGGTACCCTCAAGAGAAGTAGACTTCGCCGCTGTAAAAGTGCCCTACCAGAATATAATCTTCCAGACACTAACAAAGCTGCCTCATCTCCACGCTCTGAATCCAGAATCCAGGGACTTCACCCAAGTTTGATTAAAGTAATCATAGTCTTGTCCATTTACCTGGGTGCTGGCACTCTATGCTTCTACCTCGCCAGGCATTGGATGAAGGGAAAGAAAACAAATGGAGTTCTGGATGCTGTTTATTTCTGTGTTGTGACAATGAGCACAGTTGGGTATGGAGACCTTGTCCCTGATAGTGCAGCTACAAAACTACTTGCCTGTGCCTTTGTCTTCACAGGTATGGCTTTGATTGCTCTAAGTTTAAGCAAAGCAGCAGACTATCTGGTAGAGAAGCAGGAAATGTTGCTAATTAGAGCCTTATACATGCCCAAACATGTTGGTATGGCTGAAATTTTAAAGGAAATGGAAACCAACAAAGTGAGATACAAATGCCTCATGGTTTTTCTTCTTCTTTTGCTGATTATTACTTGTGGGACAGTCTTCCTAGCTAAAGTTGAGAAATTGAGCTTTGTCGATGCATTCTATTGTGTTTGTTCTACCATCACAACCTTGGGCTATGGAGATGTTAGCTTCTCCACTGAAGCCGGACGTGCTTTTGCGGTGCTTTGGATATTGTTTGGTACCATTTCTTTAGCACAGTTTTTCCTTTATGTTGCCGAGCTTAACACTGAAAGAAGACAAAAGAAATTAGCGAAATGGGTCCTCGGACGGAAGATGACAAATGTAGATTTGGAGGTTGCTGATCTTGATGATGATGGAGTCGTTGACGTTTCTGACTTCATCATCTATAAGCTGAAAGAGATGGGGAAGATCAGCCAAGAAGATATTTCACTTGTAATGGGAGAGTTTGAAGAACTTGATATTGATCAGTCAGGGACATTATCAGCCACTGATCTAACACTTGCTCAATCTCAACCTGTTGAGGAGGAGGCAACACCACCATAG 1077 0.4225 MASGSVKQPLISRYSGPISRTNQKGTLKRSRLRRCKSALPEYNLPDTNKAASSPRSESRIQGLHPSLIKVIIVLSIYLGAGTLCFYLARHWMKGKKTNGVLDAVYFCVVTMSTVGYGDLVPDSAATKLLACAFVFTGMALIALSLSKAADYLVEKQEMLLIRALYMPKHVGMAEILKEMETNKVRYKCLMVFLLLLLIITCGTVFLAKVEKLSFVDAFYCVCSTITTLGYGDVSFSTEAGRAFAVLWILFGTISLAQFFLYVAELNTERRQKKLAKWVLGRKMTNVDLEVADLDDDGVVDVSDFIIYKLKEMGKISQEDISLVMGEFEELDIDQSGTLSATDLTLAQSQPVEEEATPP* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0754 358 SUPERFAMILY EF-hand 251 346 IPR011992 -
Vvi19g0754 358 Pfam Ion channel 194 265 IPR013099 -
Vvi19g0754 358 Pfam Ion channel 72 153 IPR013099 -
Vvi19g0754 358 SUPERFAMILY Voltage-gated potassium channels 66 162 - -
Vvi19g0754 358 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Vvi19g0754 358 ProSitePatterns EF-hand calcium-binding domain. 292 304 IPR018247 -
Vvi19g0754 358 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 35 121 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi19g0754 358 FunFam Calcium-activated outward-rectifying potassium channel 1 64 159 - -
Vvi19g0754 358 MobiDBLite consensus disorder prediction 1 26 - -
Vvi19g0754 358 Gene3D - 162 287 - -
Vvi19g0754 358 FunFam Two-pore potassium channel 1 168 276 - -
Vvi19g0754 358 SUPERFAMILY Voltage-gated potassium channels 179 283 - -
Vvi19g0754 358 PRINTS Two pore domain K+ channel signature 226 235 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi19g0754 358 PRINTS Two pore domain K+ channel signature 109 137 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi19g0754 358 MobiDBLite consensus disorder prediction 1 25 - -
Vvi19g0754 358 Gene3D - 64 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0754 Vvi-Chr19 8298292 8299513 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0754 42 348 Ion Channels AT5G55630 60.000 5.10e-135 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0754 K05389 - vvi:100243010 659.448