Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0742 ATGTCTGCAAATGGTCAATGTTTTGTGGAGTGGAAAGAGCAATTTGTCTCCCAAGAGCGTGGCCACCGTGTGGTTCACTATTTCTTGAAGGATTCTGCTGGGAATTTCATCCTTGCAGTTGTGGGCACTGAGAGGAGTGTCAGACACATGTTCTACGTTGTTGCTGATGAGTTCTTGAATGCATACGGGTCGGAAAATTCTGTTCATGCTGGCTTCAAATGGAGATCCAGGCGGGAAGTTGTGGATTGGCTCACATCTATGCTATCAAAGCAGCATTTGCCTGGAGATGGATCGGAATCACCATCAAATGATCTGACACAAGGTTTAGGATCTTCCCAATTTGCAATGACTGGATTTGGTGCTCGACGGGCCCATATGCCAGATTACACGGGTCGGTTTGCTAGGAACCTGGAAGGACATGATTCAGACATTGTATGGTCAGGTGTTGCATGGACATGCGGTAAACAGCTCAAGCATTACCCGTCATTTTGCAGGAATGGGACTACAATAGTGATACAATCCTTTGTGTTTGTCATGGCCAAAGAGGAGGATCACTATCTTGCATATCTGGAAGATATGTATGAAGACCGGAAGGGACAGAAAAAGGTCAGAGTGAGGTGGTTTCACCATAATCAGGAAGTCAAGGGTGTAATTCCTTTACGAAATCCTCACCCAAAAGAAGTGTTCATCACGCCTTATGCACAGGTTATCAGTGCTGAGTGTGTCGACGGTCCTGCCATAGTCTTAACTCCTGAACATTATGAGAAATGCTTAGCGGCTTTTCCACACGCCTTCTTATCCAGAGTTCATCTTTGTTTTAGACAGTTTAGAAGCCATAGGGTGAAACCCTTTGATTTGAGTAAATTACGTGGCTATTTTGATCAAGCAATTCTCTCTTGTTTGGATCTCAATCCTCTCCAGAAGCCCAATTCTGATTGCTATGGTCCAACTGCAGAAGAGGATGAAGAATTAAGCCCCGGTGACAATGTAAAGCAGGGAGCTAAGAGGACTAGAAGTTGTAGAGGGCGTCAAAGGTTTGTGAATGATCGTTCATGTGCCAGAATACCTCGTCGAGGGAGCCAGATGATGATGTATGAATCTCCACACATGAACTTAAAATATGATTTGTTAAGTCGGCGGCTACTTTCCCAGAAACATGTTGAGCCCCACCCTTGGCCTAACCCACTATTTAAGGTTGATGAAAAGATAGAATTGTTGTGTCAAGATAGTGGCATTCGAGGTTGCTGGTTCAGGTGCACAGTGTTACGGATATGTCGTAAACAAATGAAAGTTAGATATGTTGATGTGCAGGATGAAGATGGGTGTGGCAATCTTGAGGAATGGACCTCAATTTTCAAGCTAGCTGCCCCTGATAAACTTGGCATGAGATGCTTGGGCCGCCCAACAATTCGACCAGCCCCTTCTAGCACTCAAACAGATGTTGCTTTGAAGGTTGGGACTCCAGTGGATGCATGGTGGAGTGATGGCTGGTGGGAGGGCGTTATAACTGAAGCCAACAACTTAGGAGATGGTCCTCTGCAAGTTTACATCCCTGGTGAAAACTTGTTCTTGAATATGCACAGCAAGGATTTAAGAATTTCTAGAGATTGGGTAGGAAACCAGTGGGTTGATATTGAGGCAAAGCCTGATATACTGTCAGCCATATATGCAGCTATTAGCCCAGATGCAAAGATTTCCACCTCCTTGATCAGTAGTAAGGATGCTGCTGTCTTGTGTCCTATAGCTCCCATTAGTACCATGCAAAATGTTGTTGAAGATAAGTTGGACTTAGCTGCTCCAGTCAGTTCCTATGGCTTCCCTGAAGACATGGACTGTGTTAATGAAATGAAGCAGCCATCACGGGAAGATGGAGGGGGTGGAAATGATGCTGATCATGTCAATGATAGTCATAATAATGACAATTTAGATGAAGCCCATGGTGATGACAATGACGAGAACAATAACAATGATGAAGATGACCACAATGATGGTGATGACAATGATTGTGAGTTAGACCTGGAGGATTTTGAAACTGCTCGACAGAAATGTGTAGCAGTGGAGCTCATGGAAGTGGTGGCATAG 2082 0.4452 MSANGQCFVEWKEQFVSQERGHRVVHYFLKDSAGNFILAVVGTERSVRHMFYVVADEFLNAYGSENSVHAGFKWRSRREVVDWLTSMLSKQHLPGDGSESPSNDLTQGLGSSQFAMTGFGARRAHMPDYTGRFARNLEGHDSDIVWSGVAWTCGKQLKHYPSFCRNGTTIVIQSFVFVMAKEEDHYLAYLEDMYEDRKGQKKVRVRWFHHNQEVKGVIPLRNPHPKEVFITPYAQVISAECVDGPAIVLTPEHYEKCLAAFPHAFLSRVHLCFRQFRSHRVKPFDLSKLRGYFDQAILSCLDLNPLQKPNSDCYGPTAEEDEELSPGDNVKQGAKRTRSCRGRQRFVNDRSCARIPRRGSQMMMYESPHMNLKYDLLSRRLLSQKHVEPHPWPNPLFKVDEKIELLCQDSGIRGCWFRCTVLRICRKQMKVRYVDVQDEDGCGNLEEWTSIFKLAAPDKLGMRCLGRPTIRPAPSSTQTDVALKVGTPVDAWWSDGWWEGVITEANNLGDGPLQVYIPGENLFLNMHSKDLRISRDWVGNQWVDIEAKPDILSAIYAAISPDAKISTSLISSKDAAVLCPIAPISTMQNVVEDKLDLAAPVSSYGFPEDMDCVNEMKQPSREDGGGGNDADHVNDSHNNDNLDEAHGDDNDENNNNDEDDHNDGDDNDCELDLEDFETARQKCVAVELMEVVA* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0742 693 SMART BAH_4 168 280 IPR001025 GO:0003682
Vvi19g0742 693 ProSiteProfiles BAH domain profile. 168 287 IPR001025 GO:0003682
Vvi19g0742 693 SMART agenet_At_2 395 460 IPR014002 -
Vvi19g0742 693 SMART agenet_At_2 481 539 IPR014002 -
Vvi19g0742 693 MobiDBLite consensus disorder prediction 608 670 - -
Vvi19g0742 693 MobiDBLite consensus disorder prediction 614 644 - -
Vvi19g0742 693 Gene3D - 137 283 IPR043151 -
Vvi19g0742 693 MobiDBLite consensus disorder prediction 312 337 - -
Vvi19g0742 693 Pfam Agenet domain 401 474 IPR008395 -
Vvi19g0742 693 CDD BAH_plant_1 163 292 - -
Vvi19g0742 693 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 397 584 - -
Vvi19g0742 693 MobiDBLite consensus disorder prediction 645 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0742 Vvi-Chr19 8128770 8133656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0742 409 537 PHD Transcription Factor Family AT5G58610 31.111 1.06e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0742 - - vvi:100265203 1395.18