Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0741 ATGGGGTTTTCTGGGTTCAGTGCAAGCCTTTGTGTTGTGGGTCTTATCTTAGTTCTTTCAGGTGGTGGTTGTGAAGGAAAGGCAAACGACAACCTGAGATTCATTACTTGGAGTGATTTCACAGCGCGGAGGGCTAGACCCTTGTTGACTGTGAAATGTCGGAATAATACAACCAAAGTTATCGTTGTGGACAAGAATGGAGGGGGTGATTCAGACACAATTCAAGGTGCAGTCGATATGGTTCCCGTGCAAAACAAACAGAGAGTGAAGATTCAGATTCGTCCTGGAATTTACAGAGAAAAGGTGTATGTACCTGCATCCAAGCCATACATTTCATTCATTGGGAGCCAAATTCGGTCTGATGATGTGGTGATTACTTGGCACGACAAAGCATCAGATTTGGACTCCAATGGGTTTCGATTGGGAACAGTCAGAACAGCTTCTGTGACTGTAGAATCTGATTATTTCTGTGCAGCAGGGATCACCATTGAGAATTCAGTGGTTGCAAGGCCTGGAGTGCCTGGAATGCAAGCAGTGGCACTGAATATAAACGGTGATAAAGCCATGTTCTACAATGTCAGGCTCTTGGGAGCACAGGACACCCTCATGGATCTGTCTGGAACACACTACTTTAACCAGTGTTACATCCAAGGAAGCATTGACTTTATCTTTGGTGGGGCAAGATCAATCTATCAGGGATGTGTCATTGAATCAATAGCGACAACTTCAGGAGCAATTGCAGCTCATCGCATGGAATCACCTGACGATGGCACAGGATTCTCCTTTGTAAACTGCACAATCATTGGAACTGGAAAAATCTACCTGGGAAGAGCTTGGGGTAAATATTCAACAGCAGTTTACTCAAACAGCAGGATCGCTGATATGATAACTCCTAGCGGATGGAGTGACTGGAACAAGCCAGAGAGGAGAAGGACTGCAATGTTTGCAGAATTCAACAACACGGGCAAGGGAGCAGATAGAAGTAGAAGGGTTAAATGGTCCAAGTCTCTCAGCCTGGAGGAAGCCATGCCTTTTGTGGATTTGAACTTCATAGCAGCAGAAAAATGGCTTAGACTATAG 1080 0.45 MGFSGFSASLCVVGLILVLSGGGCEGKANDNLRFITWSDFTARRARPLLTVKCRNNTTKVIVVDKNGGGDSDTIQGAVDMVPVQNKQRVKIQIRPGIYREKVYVPASKPYISFIGSQIRSDDVVITWHDKASDLDSNGFRLGTVRTASVTVESDYFCAAGITIENSVVARPGVPGMQAVALNINGDKAMFYNVRLLGAQDTLMDLSGTHYFNQCYIQGSIDFIFGGARSIYQGCVIESIATTSGAIAAHRMESPDDGTGFSFVNCTIIGTGKIYLGRAWGKYSTAVYSNSRIADMITPSGWSDWNKPERRRTAMFAEFNNTGKGADRSRRVKWSKSLSLEEAMPFVDLNFIAAEKWLRL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0741 359 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 54 358 - -
Vvi19g0741 359 FunFam Pectinesterase 56 359 - -
Vvi19g0741 359 Pfam Pectinesterase 61 353 IPR000070 GO:0030599|GO:0042545
Vvi19g0741 359 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Vvi19g0741 359 SUPERFAMILY Pectin lyase-like 58 357 IPR011050 -
Vvi19g0741 359 Gene3D - 54 359 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0741 Vvi-Chr19 8126479 8128014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0741 59 311 Carbohydrate Esterase AT5G55590 68.379 5.86e-122 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0741 K01051 - vvi:100242915 723.005