Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0740 ATGACGACGATGGCTATCACTTCATCTTCTGCGGCACGATTGCCTCCAATGCTTCCCACATACAATTCCTCCATTTCCCACAAACTCAGACCTTCGTCCCTCTCTCTCCTTTCGAATGCCTCCTTCTCCTCTCTCAAAACCCTTAAACCCTCTCTCTCTTCTTCCAGGGTTTTTGCTGCTCCTGAGCTCTTGAGTTCCCAAGAAACCCCTGATGGCCTTGAAGATTCTGCAACTATTGAGGTTGAGGGTTCTGAAACTCCTGGGGCTTCTGCGCTGAGTATGGGTGTGGATGCGGATAAGATGGCACCGAAGCAGAAAATTAGAATTAAATTGAGGTCTTACTGGGTCCCCCTGATAGAGGACTCATGCAAGCAAATAATGGAAGCTGCGAGAACAACCAACGCAAAGACCATGGGTCCTGTGCCATTACCAACCAAGAAGAAAATTTTTTGTGTACTTAAATCACCACATGTGCATAAGGATGCCAGGTTCCATTTTGAGATCCGAACCCACCAGCGCCTAATCGACATTCTATACCCAACTGCCCAAACTATAGATTCTTTAATGCAGCTTGATCTTCCTGCTGGGGTTGATGTAGAGGTCAAGCTCTGA 612 0.4706 MTTMAITSSSAARLPPMLPTYNSSISHKLRPSSLSLLSNASFSSLKTLKPSLSSSRVFAAPELLSSQETPDGLEDSATIEVEGSETPGASALSMGVDADKMAPKQKIRIKLRSYWVPLIEDSCKQIMEAARTTNAKTMGPVPLPTKKKIFCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0740 203 Hamap 30S ribosomal protein S10 [rpsJ]. 104 203 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vvi19g0740 203 Gene3D Ribosomal protein S10 domain 94 203 IPR036838 -
Vvi19g0740 203 SMART Ribosomal_S10_2 108 202 IPR027486 -
Vvi19g0740 203 NCBIfam 30S ribosomal protein S10 105 202 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vvi19g0740 203 ProSitePatterns Ribosomal protein S10 signature. 130 145 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi19g0740 203 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 45 203 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vvi19g0740 203 FunFam 30S ribosomal protein S10 101 203 - -
Vvi19g0740 203 PRINTS Ribosomal protein S10 family signature 162 176 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vvi19g0740 203 PRINTS Ribosomal protein S10 family signature 141 156 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vvi19g0740 203 PRINTS Ribosomal protein S10 family signature 106 119 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vvi19g0740 203 Pfam Ribosomal protein S10p/S20e 108 202 IPR027486 -
Vvi19g0740 203 SUPERFAMILY Ribosomal protein S10 106 203 IPR036838 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0740 105 203 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 31.000 1.05e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0740 K02946 - vvi:100248042 367.466