Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0733 ATGGTGGGTGCTGAAGCCATGGTTACGTACCCAGGTATCGGTTTTCTGCTAAACCCCATCTTTTTACGTGCCTTTTCTGCCTCATTGCATCTCGTTTTGTTGCTTCTTCTATTTGTATCATGGGTGTGCAAGAGAATCAAGGGGAGTGCTCTTGAAAACTGTAAGAGCACCAGGTCTTTGTCCTATAAGCAAACGTTTGCTTGCTCTCAGGGTCTGTCACTGTTGAATTTCTTCTTGTGTTTTTTGAACTACTTTTATTGGTATAGAAATGGCTGGTCTGATGAAAAGCTGGTGACCCTTTTGGATTTAGTTCTCAGAACACTTGCCTGGGGAGCAGTTTGTGTATATTTGCACACTCAATTCCATGGTTCTGTTGAACCAAAGTTCCCATTTTTGTTAAGAGTTTGGTGGGGATTTTACTTCTCCATCTCTTGTTATTGCCTTGTTATAGATATTGTTAAGAAACACCAGTCCCTCACAATTCAATTTTTGGTGCCCGATATTGTCTACGTCATAACTGGTATGTTCTTGTGCCATTCCGGGTTTTTAGGAAAGAATCAAGATGAGGAATCAATCCTTAGGGAACCCCTTTTGAATGGTAGTACTAGTATAAGTAGAGTAGAGTCAGATAAATCCAAGGGGGAAGCAACTGTGACCCCATTTTCAAAAGCTGGTTTTTTTAGCCTTCTTCCTTTCTCTTGGATGGGTCCCTTGATTGCTGAGGGTAACAAGAAAACATTAGACCTTGAGGGTGTTCCTCAGCTTGATACCAGCAACAGCGTTGTAGGGATCTTTCCAGCATTTAGAAATAAGTTCCAGTGTGATAGTGGTGGGAGCAGTGGAGTGACCACGCTTAAGCTGGTTGGATTTAGGATCAGAGCAGTACTGATCACAATGATCTACAACAAGGGTTTGACTCTTTCCTGCCAGTCAAAGCAGGGTCATACTACTGGGGAGATCATTAATTTTATGTCTGTTGATGCGGAGAGAATTGGGGGTTTCAGTTGGTATATGCATGATCCATGGATACTGATTATGCAAGTTGCTTTAGCCTTGCTAATCTTGTATAGAAACCTGGGCCTTGCTTCAGTTGCAGCTTTCTTTGAAACTGTAATTGTTATGTTGACAAATGTTCCACTGGGGAAATGGAAAGAGAAGTTTCAGGACAAGTTGATGGAATCAAAAGATAAAAGGATGAAGGCAACATCTGAGATCTTAAGAAACATGAGGATTCTCAAGCTTCAGGGATGGGAAATGAAGTTTTTGTCTAAGATTATGGACCTTCGGAAGAATGAGACAGGGTGGTTGAAAAAATATCTTTACACTTTAGCCATGACCACTTTTGTTTTCTGGGGAGCCCCAACATTTGTGTCTGTGGTCACCTTTGGAACTTGCATGCTTCTAGGGATCCCGCTTGAATCAGGGAAGATCTTATCTTCAATTGCAACATTCAGGATACTTCAACAACCCATTTACCATCTTCCTGACTTAATCTCAGCGATAGCTCAGACTAAAGTTTCCCTTGACAGAATTGCATCCTTTCTTTGTCTGGATGACCTGCAGAGTGATGTTATCGAGAGGCTTCCAAAAGGTAGTTCTGATACAGCAATTGAGATAGTGGATGGGAATTTCTCTTGGGATTTATCTTCCCCTAATCCAACACTGAAGGATATTAATTTGCGGGTGTGCCGTGGCATGAGGGTTGCTGTTTGTGGTACTGTAGGCTCAGGCAAGTCAAGCTTACTATCTTGTATGTTGGGAGAAGTGCCTAAGATATCTGGTATCCTTAAGCTGTGTGGAACAAAGGCCTATGTTGCTCAGTCTCCTTGGATACAGAGTGGCAAGATAGAAGAGAACATCTTGTTTGGTAAGGAGATGGACAGAGAAAGGTATGAAAGGGTCCTTGATGCATGTTCCTTGAAGAAGGACCTGGAGGTTCTCTCATTTGGTGATCAGACAGTTGTAGGTGAGCGGGGAATCAATTTGAGTGGTGGCCAGAAGCAAAGAATACAGATTGCACGTGCGCTTTACCAAAATACTGATATTTATCTATTTGATGATCCCTTCAGTGCTGTGGATGCTCGTACAGGAACCCATCTCTTTAAGGAATGTTTGCTGGGTCTCTTGGGTTCGAAAACAGTGATTTATGTTACACATCAAGTAGAGTTCTTACCTACTGCTGATCTCATACTGGTCGTGAAAGATGGAATGATTACACAAGCTGGAAAGTACAATGAAATTCTTAACTCTGGAACTGATTTTATGGAACTTGTTGGAGCACATGAGAAAGCTTTGTTACCACTCAATTCTGTAGAGGCAGGTGATAATATAGGTGGTACTTCTGAAGTTGTACAAAAAGAAGAAAACAAAGGTGGCCAAAATGGTAAAGCAGAGGGGATAGATGGACCAAAAGGTCAGCTTGTTCAAGAAGAGGAGAGAGAGAAAGGTGAAGTTGGGTTACGGGTTTATTGGAAATACACCAGGACAGCATATGGAGGAGCTCTTGTGCCCTTTATATTGTTGTCACAGATTCTCTTTCAGCTGCTTCAGATTGGAAGCAATTATTGGATGGCTTGGGCAAGTCCCGTGTCAGATGATGTGAAACCTGCAGTTAGAGGTTCTACTCTCATGATTGTTTATGTAGCTTTGGCTGTTGGAAGTTCTTTTTGCGTCCTTTCTAGAGCCATGCTTCTTGTAACAGCTAGTTACAAGACAGCTACTATAGTCTTCAATAAAATGCATTTGAGCCTTTTCCGTGCCCCAATGTCATTCTTTGATGCCACCCCAAGTGGACGGATTCTAAACAGAGCTTCTACAGACCAAAATGCGATCGACACAAACATTCCCATGCAAGTTGGGGCATTTGCCTTCTCATTGATTCGGCTCCTGGCAATTATTGCAGTTATGTCACAGGTTGCATGGCAGGTTTTCATTGTCTTTATTCCTGTGATTGCAACCTGCATCTGGTATCAGCAATATTACATATCTTCAGCACGAGAACTGTCAAGATTGGCCAGAGTATGCAAAGCTCCAGTAATTCAACATTTTTCTGAAACTATATCAGGATCTATGACCGTCAGGAGCTTTGATCAAGAATCTAGATTCAAGGACACAAACATGAAATTAGTAGATGGGTATTTACGGCCCAAGTTCAACATTGCTGGTGCAATGGAATGGCTGTGCTTCCGCTTGGATATGCTATCTTCTGTTACATTTGCCTTCTCTTTGGTTTTTTTAATCTCTGTTCCAGAGGGAGTAATTGATCCTGGTATTGCGGGCCTAGCAGTGACATATAGACTTACTTTGAACATGTTACAATTTGGGGTAATATGGAGTCTTTGCAATACGGAGAATAAAATTATATCAGTTGAGAGAATGCTTCAATACACTTCCATTCCAAGTGAGCCTCCTCTTGTCATAGAAGAAAACAGGCCAGCATGTTCCTGGCCTTCATATGGACAAGTTGATATTCAGGATTTGCAGGTCCGCTATGCCCCACACATGCCACTTGTATTGAGAGGTCTCACATGCACTTTCCCGGGAGGAATGAAGACTGGCATTGTAGGGCGAATTGGCAGCGGTAAATCAACCCTCATACAGACCCTCTTTCGAATTGTTGAACCTGCCGCTGGTCAGATTATGATAGATGGTACCAACATCTCTTCCATTGGACTACAAAATTTGCGGTCCAGACTAAGCATTATCCCTCAGGATCCAACCATGTTTGACGGGACTGTACGGAGCAACCTTGACCCACTTGAAGAGTACTCAGATGGGCAGACTTGGGAGGCTCTGGATAAGTGCCAGCTTGGAGATGAAGTCAGGAAGAAAGAAGGAAAGCTAGATTCTGTAGTTATTGAGAATGGAGAGAATTGGAGCATGGGTCAGAGGCAACTGGTTTGTCTTGGCCGACTTCTACTCAAGAAAAGCAAGGTCTTGGTGCTTGATGAAGCTACTGCATCAGTTGATACAGCCACAGATAATCAGATTCAGCAAACCCTTAGACAACACTTTGTCGATTCTACAGTCATAACTATTGCACATCGAACTACTTCTGTTCTTGATAGTGACATGGTTCTACTTCTGGATCATGGGATAATTGAGGAATACGATACCCCAACCAGATTGCTAGAGAACAAGTCGTCATCTTTCGCCAAGCTTGTAGCAGAGTACACTGTGAGGTCAAATTCAAGTCTTGAAAATGCGGGTGATATCTGA 4218 0.4251 MVGAEAMVTYPGIGFLLNPIFLRAFSASLHLVLLLLLFVSWVCKRIKGSALENCKSTRSLSYKQTFACSQGLSLLNFFLCFLNYFYWYRNGWSDEKLVTLLDLVLRTLAWGAVCVYLHTQFHGSVEPKFPFLLRVWWGFYFSISCYCLVIDIVKKHQSLTIQFLVPDIVYVITGMFLCHSGFLGKNQDEESILREPLLNGSTSISRVESDKSKGEATVTPFSKAGFFSLLPFSWMGPLIAEGNKKTLDLEGVPQLDTSNSVVGIFPAFRNKFQCDSGGSSGVTTLKLVGFRIRAVLITMIYNKGLTLSCQSKQGHTTGEIINFMSVDAERIGGFSWYMHDPWILIMQVALALLILYRNLGLASVAAFFETVIVMLTNVPLGKWKEKFQDKLMESKDKRMKATSEILRNMRILKLQGWEMKFLSKIMDLRKNETGWLKKYLYTLAMTTFVFWGAPTFVSVVTFGTCMLLGIPLESGKILSSIATFRILQQPIYHLPDLISAIAQTKVSLDRIASFLCLDDLQSDVIERLPKGSSDTAIEIVDGNFSWDLSSPNPTLKDINLRVCRGMRVAVCGTVGSGKSSLLSCMLGEVPKISGILKLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLDACSLKKDLEVLSFGDQTVVGERGINLSGGQKQRIQIARALYQNTDIYLFDDPFSAVDARTGTHLFKECLLGLLGSKTVIYVTHQVEFLPTADLILVVKDGMITQAGKYNEILNSGTDFMELVGAHEKALLPLNSVEAGDNIGGTSEVVQKEENKGGQNGKAEGIDGPKGQLVQEEEREKGEVGLRVYWKYTRTAYGGALVPFILLSQILFQLLQIGSNYWMAWASPVSDDVKPAVRGSTLMIVYVALAVGSSFCVLSRAMLLVTASYKTATIVFNKMHLSLFRAPMSFFDATPSGRILNRASTDQNAIDTNIPMQVGAFAFSLIRLLAIIAVMSQVAWQVFIVFIPVIATCIWYQQYYISSARELSRLARVCKAPVIQHFSETISGSMTVRSFDQESRFKDTNMKLVDGYLRPKFNIAGAMEWLCFRLDMLSSVTFAFSLVFLISVPEGVIDPGIAGLAVTYRLTLNMLQFGVIWSLCNTENKIISVERMLQYTSIPSEPPLVIEENRPACSWPSYGQVDIQDLQVRYAPHMPLVLRGLTCTFPGGMKTGIVGRIGSGKSTLIQTLFRIVEPAAGQIMIDGTNISSIGLQNLRSRLSIIPQDPTMFDGTVRSNLDPLEEYSDGQTWEALDKCQLGDEVRKKEGKLDSVVIENGENWSMGQRQLVCLGRLLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFVDSTVITIAHRTTSVLDSDMVLLLDHGIIEEYDTPTRLLENKSSSFAKLVAEYTVRSNSSLENAGDI* 1406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0733 1405 CDD ABCC_MRP_domain2 1153 1373 - -
Vvi19g0733 1405 SUPERFAMILY ABC transporter transmembrane region 836 1136 IPR036640 GO:0005524|GO:0016020
Vvi19g0733 1405 Gene3D - 1138 1391 IPR027417 -
Vvi19g0733 1405 Pfam ABC transporter 555 689 IPR003439 GO:0005524
Vvi19g0733 1405 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 838 1118 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0733 1405 Gene3D - 520 766 IPR027417 -
Vvi19g0733 1405 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1155 1389 IPR003439 GO:0005524
Vvi19g0733 1405 FunFam ABC transporter C family member 3 1138 1390 - -
Vvi19g0733 1405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1146 1385 IPR027417 -
Vvi19g0733 1405 ProSitePatterns ABC transporters family signature. 662 676 IPR017871 GO:0005524|GO:0016887
Vvi19g0733 1405 Pfam ABC transporter 1173 1320 IPR003439 GO:0005524
Vvi19g0733 1405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 534 759 IPR027417 -
Vvi19g0733 1405 FunFam ABC transporter C family member 5 522 769 - -
Vvi19g0733 1405 SMART AAA_5 1181 1372 IPR003593 GO:0016887
Vvi19g0733 1405 SMART AAA_5 564 737 IPR003593 GO:0016887
Vvi19g0733 1405 Coils Coil 384 404 - -
Vvi19g0733 1405 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 284 1392 - -
Vvi19g0733 1405 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 288 503 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0733 1405 Gene3D ABC transporter type 1, transmembrane domain 801 1136 IPR036640 GO:0005524|GO:0016020
Vvi19g0733 1405 Gene3D ABC transporter type 1, transmembrane domain 226 519 IPR036640 GO:0005524|GO:0016020
Vvi19g0733 1405 FunFam ABC transporter C family member 5 800 1136 - -
Vvi19g0733 1405 CDD ABC_6TM_ABCC_D1 287 511 IPR044746 GO:0140359
Vvi19g0733 1405 SUPERFAMILY ABC transporter transmembrane region 287 515 IPR036640 GO:0005524|GO:0016020
Vvi19g0733 1405 CDD ABCC_MRP_domain1 537 736 - -
Vvi19g0733 1405 Pfam ABC transporter transmembrane region 284 490 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0733 1405 Pfam ABC transporter transmembrane region 840 1098 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0733 1405 FunFam ABC transporter C family member 10 219 519 - -
Vvi19g0733 1405 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 537 760 IPR003439 GO:0005524
Vvi19g0733 1405 CDD ABC_6TM_ABCC_D2 836 1130 IPR044726 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0733 Vvi-Chr19 8023676 8034820 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0733 537 765 Calmodulin-binding Proteins AT2G36910 31.349 6.42e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0733 - K05666 vvi:100254999 2015.74