Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi19g0732 | ATGGTGGGATTCGAAGCCATGGTTACGTATCCTGGTACCGGTTTTCTGCTAAACCCCGTCTTTTTACGTGTATTTTCTGCCTCATTGCATCTAGTTTTGTTGCTTCTCCTGTTTGTATCATGGGTGTGCAAGAGAATCAAGGGGGGTGCTCCTGAAAATTGTAAGAGGACTAGGTTTTTGTACTATAAGCAAACGTTTGCTTGCTGTCAGGGTCTGTCGCTGTTGAATTTGTTGTTGTGTTTTTTGAACTACTTTTATTGGTATAGAAATGGCTGGTCTGATGAAAGGCTGGTGACCCTTTTGGATTTAGTGCTCAGAACACTTGCCTGGGGAGCAGTCTGTGTATATTTGCACACTCAATTCATTGGTTCTGTTGAACCAAAGTTCCCATTTTTGTTAAGAGTTTGGTGGGGATTTTACTTCTCCATCTCATGTTATTTCCTTGTTCTAGATATTGTCAAGAAACACCAGTCCCTACGAATTCAATATTTGGTGCCCGATATTGTCTACGTCATAACTGGTCTGTTCTTGTGCTACTCGGGGTTTTTGGGAAAGAATCAAGGCGAGGAATCGATTCTTAGGGAACCCCTTTTGAATGGTAGTACCAGTATAAGTAGAGTGGAGTCCAATAAATCCAAGGGGGAAGCAACTGTGACCCCCTTTTCAAAAGCTGGTTTTTTTAGCCTTCTTACTTTCTCTTGGATCGGTCCCTTGATTGCTGAGGGTAACAAGAAAACATTAGACCTTGAGGATGTTCCTCAGCTTGATACCAGCAACAGCGTTGCGGGGGTCTTTCCAGCATTTAGTAATAAGCTCCAGTGTGATAGTGGTGGAAGTAGTGGAGTGACCACGCTTAAGCTGGTGAAAGCATTGATCTTTGCATGCTGGGCAGAAATCCTATTGACGGCTTTCTTGGTACTTGTAAAGACATTAGCATCTTATGTTGGGCCCTATCTTATTGATACCTTCGTTCAATATCTCAATGGGCGGAGGGAATTCAAAAATGAAGGCTATCTTTTGGCTATGGCTTTTTTTGTTGCGAAGCTTGTTGAGCGCCTTTCAGTGAGGCACTGGTTCTTTAGATTGCAGCAGGTTGGAATTAGGATCAGAGCAGTACTGATCACAATGATCTACAACAAGGGTTTGACTCTTTCCTGCCAGTCAAAGCAGGGTCATTCTACTGGGGAGATCATTAATTTTATGTCTGTTGATGCGGAGAGAATTGGGGATTTCAGTTGGTATATGCATGATCCATGGATGGTGATTGTGCAAGTTACTTTAGCCTTGCTAATCTTGTATAAAAACCTGGGCCTTGCTTCAGTTGCAGCTTTCTTTGCAACTGTAATTGTTATGTTGACAAATGTTCCACTAGGGAAATGGCAAGAGAAGTTTCAGGACAAGTTGATGGAATCAAAAGATAAAAGGATGAAGGCAACATCCGAGATCTTAAGAAACATGAGGATTCTCAAGCTTCAGGGATGGGAGATGAAGTTTTTGTCCAAAATTGTAGACCTTCGGAAGAATGAGACAGGGTGGTTGAAAAAATATCTTTACACTTCAGCCGTGACCACTTTTGTTTTCTGGGGAGCCCCAACATTTGTGTCTGTGGCCACCTTTGGAACTTGCATGCTTCTAGGGATCCCGCTTGAATCAGGGAAGATCTTATCTTCACTTGCAACATTCAGGATACTTCAAGAACCCATCTACAGTCTTCCTGACCTAATCTCAATGATAGCTCAGACTAAAGTTTCCCTTGACAGAATTGCATCCTTTCTTCGTCTGGATGACCTGCCGAGTGATGTTATCGAGAGGCTTCCAAAAGGTAGTTCTGATACAGCAATTGAGATAGTGGATGGGAATTTCTCTTGGGATTTATCTTCCCCTAATCCAACACTGAAGGATATTAATTTGCGGGTGTGCCGTGGCATGAGGGTTGCTGTTTGTGGTACTGTAGGCTCAGGCAAGTCAAGCTTACTATCTTGTATGTTGGGAGAAGTGCCTAAGATATCTGGTATCCTTAAGCTGTGTGGAACAAAGGCCTATGTTGCTCAGTCTCCTTGGATACAGAGTGGCAAGATAGAAGAGAACATCTTGTTTGGTAAGGAGATGGAAAGAGAAAGGTATGAAAGGGTCCTTGATGCATGTTCCTTAAAGAAGGACCTGGAGGTTCTCTCATTTGGTGATCAGACAGTAATAGGTGAGTGGGGAATCAATATGAGTGGTGGCCAGAAGCAAAGAATACAGATTGCACGTGCGCTCTACCAAAATGCTGATATTTATCTGTTTGATGACCCCTTCAGTGCCGTGGATGCTCATACAGGAACCCATCTCTTTAAGGAATGTTTGCTGGGTCTCTCGGGTTCGAAAACAGTGATTTATGTTACACATCAAGTAGAGTTCTTACCTGCTGCTGATCTCATACTGGTCATGAAAGATGGAAGGGTTACACAAGCAGGAAAGTACAATGAAATTCTCAACTCTGGAACTGATTTTATGGAACTTGTTGGTGCACATAAGAAAGCTTTGTTAGCACTCAATTCTGTAGAGGCAGGGTCACTTTCAGAAAAATTAAGTATCCTTGAGGATAGTGATAATATTGGTGGTACTTCTGAAGTAGTTGAAAAAGAAGAAAACAGAGGTGGCCAAAATGGTAAAGCAGAGGAGATAGATGGACCAAAAGGTCAGCTTGTTCAAGAAGAGGAGAGAGAGAAAGGTAAAGTTGGGCTATGGGTTTATTGGAAATACATCAGGACAGCATATGGAGGAGCTCTTGTGCCCTTTATATTGTTGTCACAGATTCTCTTTCAGCTGCTTCAGATTGGAAGCAATTATTGGATGGCTTGGGCAAGTCCCGTGTCAGATGATGTGAAACCTGCAGTTAGAGGTTCTACTCTCATAATTGTTTATGTAGCTTTGGCTGTTGGAAGTTCTTTTTGCGTCCTTTCCAGAGCCATGCTTCTTGTAACAGCTGGTTACAAGACAGCTACTATACTCTTCAATAAAATGCATTTGTGCGTCTTCCGTGCCCCAATGTCATTCTTTGATGCCACCCCAAGTGGGCGAATTCTAAACAGAGCTTCTGCAGACCAAAGTACGATCGATACAACCATGCCAATGCAAGTTGGGGCATTTGCCTTCCAATTGATTCAGCTCCTGGGAATTATTGCAGTTATGTCACAGGTTGCATGGCAGGTTTTCATTGTCTTTATTCCTGTGATTGCAACCTGCATCTGGTATCAGCAATATTACATACCTTCAGCACGAGAACTGTCAAGATTGGCTGGAGTATGCAAAGCTCCAGTAATTCAACATTTTTCTGAAACTATAGCAGGATCTATGACCATCAGAAGCTTTGATCAAGAATCTAGATTCAGGGATACAAACATGAAATTGGTAGATGGGTATTTACGGCCCAAGTTCAACATTGCTGGTGCAATGGAATGGCTGTGCTTCCGCTTGGATATGCTATCTTCTGTTACATTTGCCTTCTCTTTGGTTTTCTTAATCTCTGTTCCAGAGGGAGTAATTGATCCTGGTATTGCGGGCCTAGCAATGACATATGGACTTAATTTGAACATGATACAAGCTAGGGTAATATGGAATCTTTGCAATATGGAGAATAAAATTATATCAGTTGAGAGAATACTTCAATACACTTCCATTCCAAGCGAGCCTCCTCTTGTCACAGAAGAAAACAGGCTAGCATGTTCTTGGCCTTCACATGGAGAAGTTGATATTCAGGATTTGCAGGTCCGCTATGCCCCACACATGCCACTTGTATTGAGAGGTCTCACATGCACTTTCCTGGGAGGAATGAAGACTGGCATTGTAGGGCGAACTGGCAGTGGTAAATCAACCCTCATACAGACCCTCTTTCGAATTGTTGAACCTGCCGCTGGTCAGATTATGATAGATGGTACCAACATCTCTTCTATTGGACTAAATGATTTGCGGACTAGACTAAGCATTATCCCTCAGGATCCAACCATGTTTGAAGGGACTGTACGGAGCAACCTTGACCCACTTGAAGAGCACTCAGATGAACAGATTTGGGAGGCTCTGGATAAGTGCCAGCTTGGAGATGAAGTCAGGAAGAAAGAAGGAAAGCTAGATTCTGCAGTTATTGAGAATGGAGAGAATTGGAGCATGGGTCAGAGGCAACTGGTTTGTCTTGGCAGAGTTCTACTGAAGAAAAGCAAGGTCTTAGTGCTTGATGAAGCTACTGCATCAGTTGATACAGCCACGGATAATCTGATTCAGCAAACCCTTAGACAACACTTTGTCGATTCCACAGTCATAACCATTGCACATCGAATTACTTCTGTTCTTGATAGTGACAAGGTTCTACTTCTGGATCATGGGCTTATTGAGGAATACGATACCCCCACCAGATTGCTAGAGAACAAGTCGTCATCTTTTGCAAAGCTTGTAGCAGAGTACACTGTGAGGTCACATTCTAATCTTGAAAATGCGGGTGATATCTGA | 4485 | 0.4274 | MVGFEAMVTYPGTGFLLNPVFLRVFSASLHLVLLLLLFVSWVCKRIKGGAPENCKRTRFLYYKQTFACCQGLSLLNLLLCFLNYFYWYRNGWSDERLVTLLDLVLRTLAWGAVCVYLHTQFIGSVEPKFPFLLRVWWGFYFSISCYFLVLDIVKKHQSLRIQYLVPDIVYVITGLFLCYSGFLGKNQGEESILREPLLNGSTSISRVESNKSKGEATVTPFSKAGFFSLLTFSWIGPLIAEGNKKTLDLEDVPQLDTSNSVAGVFPAFSNKLQCDSGGSSGVTTLKLVKALIFACWAEILLTAFLVLVKTLASYVGPYLIDTFVQYLNGRREFKNEGYLLAMAFFVAKLVERLSVRHWFFRLQQVGIRIRAVLITMIYNKGLTLSCQSKQGHSTGEIINFMSVDAERIGDFSWYMHDPWMVIVQVTLALLILYKNLGLASVAAFFATVIVMLTNVPLGKWQEKFQDKLMESKDKRMKATSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYLYTSAVTTFVFWGAPTFVSVATFGTCMLLGIPLESGKILSSLATFRILQEPIYSLPDLISMIAQTKVSLDRIASFLRLDDLPSDVIERLPKGSSDTAIEIVDGNFSWDLSSPNPTLKDINLRVCRGMRVAVCGTVGSGKSSLLSCMLGEVPKISGILKLCGTKAYVAQSPWIQSGKIEENILFGKEMERERYERVLDACSLKKDLEVLSFGDQTVIGEWGINMSGGQKQRIQIARALYQNADIYLFDDPFSAVDAHTGTHLFKECLLGLSGSKTVIYVTHQVEFLPAADLILVMKDGRVTQAGKYNEILNSGTDFMELVGAHKKALLALNSVEAGSLSEKLSILEDSDNIGGTSEVVEKEENRGGQNGKAEEIDGPKGQLVQEEEREKGKVGLWVYWKYIRTAYGGALVPFILLSQILFQLLQIGSNYWMAWASPVSDDVKPAVRGSTLIIVYVALAVGSSFCVLSRAMLLVTAGYKTATILFNKMHLCVFRAPMSFFDATPSGRILNRASADQSTIDTTMPMQVGAFAFQLIQLLGIIAVMSQVAWQVFIVFIPVIATCIWYQQYYIPSARELSRLAGVCKAPVIQHFSETIAGSMTIRSFDQESRFRDTNMKLVDGYLRPKFNIAGAMEWLCFRLDMLSSVTFAFSLVFLISVPEGVIDPGIAGLAMTYGLNLNMIQARVIWNLCNMENKIISVERILQYTSIPSEPPLVTEENRLACSWPSHGEVDIQDLQVRYAPHMPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIMIDGTNISSIGLNDLRTRLSIIPQDPTMFEGTVRSNLDPLEEHSDEQIWEALDKCQLGDEVRKKEGKLDSAVIENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFVDSTVITIAHRITSVLDSDKVLLLDHGLIEEYDTPTRLLENKSSSFAKLVAEYTVRSHSNLENAGDI* | 1495 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi19g0732 | 1494 | Gene3D | ABC transporter type 1, transmembrane domain | 278 | 596 | IPR036640 | GO:0005524|GO:0016020 | |
Vvi19g0732 | 1494 | Gene3D | ABC transporter type 1, transmembrane domain | 889 | 1225 | IPR036640 | GO:0005524|GO:0016020 | |
Vvi19g0732 | 1494 | CDD | ABC_6TM_ABCC_D2 | 925 | 1219 | IPR044726 | GO:0140359 | |
Vvi19g0732 | 1494 | SUPERFAMILY | ABC transporter transmembrane region | 923 | 1225 | IPR036640 | GO:0005524|GO:0016020 | |
Vvi19g0732 | 1494 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 614 | 837 | IPR003439 | GO:0005524 | |
Vvi19g0732 | 1494 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 611 | 836 | IPR027417 | - | |
Vvi19g0732 | 1494 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 221 | 1481 | - | - | |
Vvi19g0732 | 1494 | FunFam | ABC transporter C family member 5 | 599 | 846 | - | - | |
Vvi19g0732 | 1494 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 300 | 580 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vvi19g0732 | 1494 | Pfam | ABC transporter | 1262 | 1409 | IPR003439 | GO:0005524 | |
Vvi19g0732 | 1494 | Pfam | ABC transporter | 632 | 766 | IPR003439 | GO:0005524 | |
Vvi19g0732 | 1494 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1235 | 1474 | IPR027417 | - | |
Vvi19g0732 | 1494 | SUPERFAMILY | ABC transporter transmembrane region | 291 | 600 | IPR036640 | GO:0005524|GO:0016020 | |
Vvi19g0732 | 1494 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1244 | 1478 | IPR003439 | GO:0005524 | |
Vvi19g0732 | 1494 | CDD | ABC_6TM_ABCC_D1 | 301 | 588 | IPR044746 | GO:0140359 | |
Vvi19g0732 | 1494 | CDD | ABCC_MRP_domain1 | 614 | 814 | - | - | |
Vvi19g0732 | 1494 | ProSitePatterns | ABC transporters family signature. | 739 | 753 | IPR017871 | GO:0005524|GO:0016887 | |
Vvi19g0732 | 1494 | Gene3D | - | 601 | 849 | IPR027417 | - | |
Vvi19g0732 | 1494 | FunFam | ABC transporter C family member 5 | 889 | 1225 | - | - | |
Vvi19g0732 | 1494 | CDD | ABCC_MRP_domain2 | 1242 | 1462 | - | - | |
Vvi19g0732 | 1494 | MobiDBLite | consensus disorder prediction | 870 | 894 | - | - | |
Vvi19g0732 | 1494 | Pfam | ABC transporter transmembrane region | 300 | 567 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vvi19g0732 | 1494 | Pfam | ABC transporter transmembrane region | 929 | 1169 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vvi19g0732 | 1494 | FunFam | ABC transporter C family member 10 | 283 | 596 | - | - | |
Vvi19g0732 | 1494 | FunFam | ABC transporter C family member 3 | 1227 | 1479 | - | - | |
Vvi19g0732 | 1494 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 927 | 1207 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vvi19g0732 | 1494 | Gene3D | - | 1227 | 1480 | IPR027417 | - | |
Vvi19g0732 | 1494 | SMART | AAA_5 | 641 | 814 | IPR003593 | GO:0016887 | |
Vvi19g0732 | 1494 | SMART | AAA_5 | 1270 | 1455 | IPR003593 | GO:0016887 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi19g0732 | Vvi-Chr19 | 7977374 | 7983555 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi19g0732 | 614 | 842 | Calmodulin-binding Proteins | AT2G36910 | 30.556 | 3.02e-22 | 102 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi19g0732 | - | K05666 | vvi:100254999 | 2907.09 |