Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0732 ATGGTGGGATTCGAAGCCATGGTTACGTATCCTGGTACCGGTTTTCTGCTAAACCCCGTCTTTTTACGTGTATTTTCTGCCTCATTGCATCTAGTTTTGTTGCTTCTCCTGTTTGTATCATGGGTGTGCAAGAGAATCAAGGGGGGTGCTCCTGAAAATTGTAAGAGGACTAGGTTTTTGTACTATAAGCAAACGTTTGCTTGCTGTCAGGGTCTGTCGCTGTTGAATTTGTTGTTGTGTTTTTTGAACTACTTTTATTGGTATAGAAATGGCTGGTCTGATGAAAGGCTGGTGACCCTTTTGGATTTAGTGCTCAGAACACTTGCCTGGGGAGCAGTCTGTGTATATTTGCACACTCAATTCATTGGTTCTGTTGAACCAAAGTTCCCATTTTTGTTAAGAGTTTGGTGGGGATTTTACTTCTCCATCTCATGTTATTTCCTTGTTCTAGATATTGTCAAGAAACACCAGTCCCTACGAATTCAATATTTGGTGCCCGATATTGTCTACGTCATAACTGGTCTGTTCTTGTGCTACTCGGGGTTTTTGGGAAAGAATCAAGGCGAGGAATCGATTCTTAGGGAACCCCTTTTGAATGGTAGTACCAGTATAAGTAGAGTGGAGTCCAATAAATCCAAGGGGGAAGCAACTGTGACCCCCTTTTCAAAAGCTGGTTTTTTTAGCCTTCTTACTTTCTCTTGGATCGGTCCCTTGATTGCTGAGGGTAACAAGAAAACATTAGACCTTGAGGATGTTCCTCAGCTTGATACCAGCAACAGCGTTGCGGGGGTCTTTCCAGCATTTAGTAATAAGCTCCAGTGTGATAGTGGTGGAAGTAGTGGAGTGACCACGCTTAAGCTGGTGAAAGCATTGATCTTTGCATGCTGGGCAGAAATCCTATTGACGGCTTTCTTGGTACTTGTAAAGACATTAGCATCTTATGTTGGGCCCTATCTTATTGATACCTTCGTTCAATATCTCAATGGGCGGAGGGAATTCAAAAATGAAGGCTATCTTTTGGCTATGGCTTTTTTTGTTGCGAAGCTTGTTGAGCGCCTTTCAGTGAGGCACTGGTTCTTTAGATTGCAGCAGGTTGGAATTAGGATCAGAGCAGTACTGATCACAATGATCTACAACAAGGGTTTGACTCTTTCCTGCCAGTCAAAGCAGGGTCATTCTACTGGGGAGATCATTAATTTTATGTCTGTTGATGCGGAGAGAATTGGGGATTTCAGTTGGTATATGCATGATCCATGGATGGTGATTGTGCAAGTTACTTTAGCCTTGCTAATCTTGTATAAAAACCTGGGCCTTGCTTCAGTTGCAGCTTTCTTTGCAACTGTAATTGTTATGTTGACAAATGTTCCACTAGGGAAATGGCAAGAGAAGTTTCAGGACAAGTTGATGGAATCAAAAGATAAAAGGATGAAGGCAACATCCGAGATCTTAAGAAACATGAGGATTCTCAAGCTTCAGGGATGGGAGATGAAGTTTTTGTCCAAAATTGTAGACCTTCGGAAGAATGAGACAGGGTGGTTGAAAAAATATCTTTACACTTCAGCCGTGACCACTTTTGTTTTCTGGGGAGCCCCAACATTTGTGTCTGTGGCCACCTTTGGAACTTGCATGCTTCTAGGGATCCCGCTTGAATCAGGGAAGATCTTATCTTCACTTGCAACATTCAGGATACTTCAAGAACCCATCTACAGTCTTCCTGACCTAATCTCAATGATAGCTCAGACTAAAGTTTCCCTTGACAGAATTGCATCCTTTCTTCGTCTGGATGACCTGCCGAGTGATGTTATCGAGAGGCTTCCAAAAGGTAGTTCTGATACAGCAATTGAGATAGTGGATGGGAATTTCTCTTGGGATTTATCTTCCCCTAATCCAACACTGAAGGATATTAATTTGCGGGTGTGCCGTGGCATGAGGGTTGCTGTTTGTGGTACTGTAGGCTCAGGCAAGTCAAGCTTACTATCTTGTATGTTGGGAGAAGTGCCTAAGATATCTGGTATCCTTAAGCTGTGTGGAACAAAGGCCTATGTTGCTCAGTCTCCTTGGATACAGAGTGGCAAGATAGAAGAGAACATCTTGTTTGGTAAGGAGATGGAAAGAGAAAGGTATGAAAGGGTCCTTGATGCATGTTCCTTAAAGAAGGACCTGGAGGTTCTCTCATTTGGTGATCAGACAGTAATAGGTGAGTGGGGAATCAATATGAGTGGTGGCCAGAAGCAAAGAATACAGATTGCACGTGCGCTCTACCAAAATGCTGATATTTATCTGTTTGATGACCCCTTCAGTGCCGTGGATGCTCATACAGGAACCCATCTCTTTAAGGAATGTTTGCTGGGTCTCTCGGGTTCGAAAACAGTGATTTATGTTACACATCAAGTAGAGTTCTTACCTGCTGCTGATCTCATACTGGTCATGAAAGATGGAAGGGTTACACAAGCAGGAAAGTACAATGAAATTCTCAACTCTGGAACTGATTTTATGGAACTTGTTGGTGCACATAAGAAAGCTTTGTTAGCACTCAATTCTGTAGAGGCAGGGTCACTTTCAGAAAAATTAAGTATCCTTGAGGATAGTGATAATATTGGTGGTACTTCTGAAGTAGTTGAAAAAGAAGAAAACAGAGGTGGCCAAAATGGTAAAGCAGAGGAGATAGATGGACCAAAAGGTCAGCTTGTTCAAGAAGAGGAGAGAGAGAAAGGTAAAGTTGGGCTATGGGTTTATTGGAAATACATCAGGACAGCATATGGAGGAGCTCTTGTGCCCTTTATATTGTTGTCACAGATTCTCTTTCAGCTGCTTCAGATTGGAAGCAATTATTGGATGGCTTGGGCAAGTCCCGTGTCAGATGATGTGAAACCTGCAGTTAGAGGTTCTACTCTCATAATTGTTTATGTAGCTTTGGCTGTTGGAAGTTCTTTTTGCGTCCTTTCCAGAGCCATGCTTCTTGTAACAGCTGGTTACAAGACAGCTACTATACTCTTCAATAAAATGCATTTGTGCGTCTTCCGTGCCCCAATGTCATTCTTTGATGCCACCCCAAGTGGGCGAATTCTAAACAGAGCTTCTGCAGACCAAAGTACGATCGATACAACCATGCCAATGCAAGTTGGGGCATTTGCCTTCCAATTGATTCAGCTCCTGGGAATTATTGCAGTTATGTCACAGGTTGCATGGCAGGTTTTCATTGTCTTTATTCCTGTGATTGCAACCTGCATCTGGTATCAGCAATATTACATACCTTCAGCACGAGAACTGTCAAGATTGGCTGGAGTATGCAAAGCTCCAGTAATTCAACATTTTTCTGAAACTATAGCAGGATCTATGACCATCAGAAGCTTTGATCAAGAATCTAGATTCAGGGATACAAACATGAAATTGGTAGATGGGTATTTACGGCCCAAGTTCAACATTGCTGGTGCAATGGAATGGCTGTGCTTCCGCTTGGATATGCTATCTTCTGTTACATTTGCCTTCTCTTTGGTTTTCTTAATCTCTGTTCCAGAGGGAGTAATTGATCCTGGTATTGCGGGCCTAGCAATGACATATGGACTTAATTTGAACATGATACAAGCTAGGGTAATATGGAATCTTTGCAATATGGAGAATAAAATTATATCAGTTGAGAGAATACTTCAATACACTTCCATTCCAAGCGAGCCTCCTCTTGTCACAGAAGAAAACAGGCTAGCATGTTCTTGGCCTTCACATGGAGAAGTTGATATTCAGGATTTGCAGGTCCGCTATGCCCCACACATGCCACTTGTATTGAGAGGTCTCACATGCACTTTCCTGGGAGGAATGAAGACTGGCATTGTAGGGCGAACTGGCAGTGGTAAATCAACCCTCATACAGACCCTCTTTCGAATTGTTGAACCTGCCGCTGGTCAGATTATGATAGATGGTACCAACATCTCTTCTATTGGACTAAATGATTTGCGGACTAGACTAAGCATTATCCCTCAGGATCCAACCATGTTTGAAGGGACTGTACGGAGCAACCTTGACCCACTTGAAGAGCACTCAGATGAACAGATTTGGGAGGCTCTGGATAAGTGCCAGCTTGGAGATGAAGTCAGGAAGAAAGAAGGAAAGCTAGATTCTGCAGTTATTGAGAATGGAGAGAATTGGAGCATGGGTCAGAGGCAACTGGTTTGTCTTGGCAGAGTTCTACTGAAGAAAAGCAAGGTCTTAGTGCTTGATGAAGCTACTGCATCAGTTGATACAGCCACGGATAATCTGATTCAGCAAACCCTTAGACAACACTTTGTCGATTCCACAGTCATAACCATTGCACATCGAATTACTTCTGTTCTTGATAGTGACAAGGTTCTACTTCTGGATCATGGGCTTATTGAGGAATACGATACCCCCACCAGATTGCTAGAGAACAAGTCGTCATCTTTTGCAAAGCTTGTAGCAGAGTACACTGTGAGGTCACATTCTAATCTTGAAAATGCGGGTGATATCTGA 4485 0.4274 MVGFEAMVTYPGTGFLLNPVFLRVFSASLHLVLLLLLFVSWVCKRIKGGAPENCKRTRFLYYKQTFACCQGLSLLNLLLCFLNYFYWYRNGWSDERLVTLLDLVLRTLAWGAVCVYLHTQFIGSVEPKFPFLLRVWWGFYFSISCYFLVLDIVKKHQSLRIQYLVPDIVYVITGLFLCYSGFLGKNQGEESILREPLLNGSTSISRVESNKSKGEATVTPFSKAGFFSLLTFSWIGPLIAEGNKKTLDLEDVPQLDTSNSVAGVFPAFSNKLQCDSGGSSGVTTLKLVKALIFACWAEILLTAFLVLVKTLASYVGPYLIDTFVQYLNGRREFKNEGYLLAMAFFVAKLVERLSVRHWFFRLQQVGIRIRAVLITMIYNKGLTLSCQSKQGHSTGEIINFMSVDAERIGDFSWYMHDPWMVIVQVTLALLILYKNLGLASVAAFFATVIVMLTNVPLGKWQEKFQDKLMESKDKRMKATSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYLYTSAVTTFVFWGAPTFVSVATFGTCMLLGIPLESGKILSSLATFRILQEPIYSLPDLISMIAQTKVSLDRIASFLRLDDLPSDVIERLPKGSSDTAIEIVDGNFSWDLSSPNPTLKDINLRVCRGMRVAVCGTVGSGKSSLLSCMLGEVPKISGILKLCGTKAYVAQSPWIQSGKIEENILFGKEMERERYERVLDACSLKKDLEVLSFGDQTVIGEWGINMSGGQKQRIQIARALYQNADIYLFDDPFSAVDAHTGTHLFKECLLGLSGSKTVIYVTHQVEFLPAADLILVMKDGRVTQAGKYNEILNSGTDFMELVGAHKKALLALNSVEAGSLSEKLSILEDSDNIGGTSEVVEKEENRGGQNGKAEEIDGPKGQLVQEEEREKGKVGLWVYWKYIRTAYGGALVPFILLSQILFQLLQIGSNYWMAWASPVSDDVKPAVRGSTLIIVYVALAVGSSFCVLSRAMLLVTAGYKTATILFNKMHLCVFRAPMSFFDATPSGRILNRASADQSTIDTTMPMQVGAFAFQLIQLLGIIAVMSQVAWQVFIVFIPVIATCIWYQQYYIPSARELSRLAGVCKAPVIQHFSETIAGSMTIRSFDQESRFRDTNMKLVDGYLRPKFNIAGAMEWLCFRLDMLSSVTFAFSLVFLISVPEGVIDPGIAGLAMTYGLNLNMIQARVIWNLCNMENKIISVERILQYTSIPSEPPLVTEENRLACSWPSHGEVDIQDLQVRYAPHMPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIMIDGTNISSIGLNDLRTRLSIIPQDPTMFEGTVRSNLDPLEEHSDEQIWEALDKCQLGDEVRKKEGKLDSAVIENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFVDSTVITIAHRITSVLDSDKVLLLDHGLIEEYDTPTRLLENKSSSFAKLVAEYTVRSHSNLENAGDI* 1495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0732 1494 Gene3D ABC transporter type 1, transmembrane domain 278 596 IPR036640 GO:0005524|GO:0016020
Vvi19g0732 1494 Gene3D ABC transporter type 1, transmembrane domain 889 1225 IPR036640 GO:0005524|GO:0016020
Vvi19g0732 1494 CDD ABC_6TM_ABCC_D2 925 1219 IPR044726 GO:0140359
Vvi19g0732 1494 SUPERFAMILY ABC transporter transmembrane region 923 1225 IPR036640 GO:0005524|GO:0016020
Vvi19g0732 1494 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 614 837 IPR003439 GO:0005524
Vvi19g0732 1494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 836 IPR027417 -
Vvi19g0732 1494 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 221 1481 - -
Vvi19g0732 1494 FunFam ABC transporter C family member 5 599 846 - -
Vvi19g0732 1494 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 300 580 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0732 1494 Pfam ABC transporter 1262 1409 IPR003439 GO:0005524
Vvi19g0732 1494 Pfam ABC transporter 632 766 IPR003439 GO:0005524
Vvi19g0732 1494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1235 1474 IPR027417 -
Vvi19g0732 1494 SUPERFAMILY ABC transporter transmembrane region 291 600 IPR036640 GO:0005524|GO:0016020
Vvi19g0732 1494 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1244 1478 IPR003439 GO:0005524
Vvi19g0732 1494 CDD ABC_6TM_ABCC_D1 301 588 IPR044746 GO:0140359
Vvi19g0732 1494 CDD ABCC_MRP_domain1 614 814 - -
Vvi19g0732 1494 ProSitePatterns ABC transporters family signature. 739 753 IPR017871 GO:0005524|GO:0016887
Vvi19g0732 1494 Gene3D - 601 849 IPR027417 -
Vvi19g0732 1494 FunFam ABC transporter C family member 5 889 1225 - -
Vvi19g0732 1494 CDD ABCC_MRP_domain2 1242 1462 - -
Vvi19g0732 1494 MobiDBLite consensus disorder prediction 870 894 - -
Vvi19g0732 1494 Pfam ABC transporter transmembrane region 300 567 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0732 1494 Pfam ABC transporter transmembrane region 929 1169 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0732 1494 FunFam ABC transporter C family member 10 283 596 - -
Vvi19g0732 1494 FunFam ABC transporter C family member 3 1227 1479 - -
Vvi19g0732 1494 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 927 1207 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0732 1494 Gene3D - 1227 1480 IPR027417 -
Vvi19g0732 1494 SMART AAA_5 641 814 IPR003593 GO:0016887
Vvi19g0732 1494 SMART AAA_5 1270 1455 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0732 Vvi-Chr19 7977374 7983555 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0732 614 842 Calmodulin-binding Proteins AT2G36910 30.556 3.02e-22 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0732 - K05666 vvi:100254999 2907.09