Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0731 ATGGTGGGGCTCGAAGCCATGGTTACGTACCCAGACATTGTTAAGAAAGACCAGTCCCTACAAGTTCAATTTTTGGTGCCCGACATTGTCTACGTCATAACTGGTCTGTTCTTGTGCTATTCCGGGTTTTTGGGAAAGAATCAAGGTAAGGAATCAATTCTTAGGGAACCACTTTTGAATGGTGGCACCAGTATAAGTATAGTAGAGTCTGATGAATCCAAGGGGGAAGAAACTGTGACCCCCTTTTCAAAAGCTGGTTTTTTTAGCCTTCTTACTTTCTCTTGGATCGGTCCCTTGATTGCTGAGGGTAACAAGAAAACATTAGACCTTGGGGATGTTCCTCAGCTTGATACCAGCAACAGCGTTGTAGCGGTCTTTCCAGCATTTAGAAATAAGCTCCAGTGTGATTGTGGTGGAAGTAATGGAGTGACCACGCTTAAGCTTGTGAAAGCATTGATCTTTGCATTTTGGGCAGAAATCCTATTGACGGCTTTATTCCTACTTCTGGACATATTAGCTTCTTATGTTGGGCCCTATCTTATTGACACCTTCGTTCAATATCTCAATGGGCGGAGGGAATTCAAAAATGAAGGCTATGTTTTGGTTATGGTCTTTTTTCTTGCGAAGCTTGTTGAGTGCCTTTCACTGAGGCAGTGTTCCTTTAGATTGCAGCAGGTTGGTTTTAGGATCAGAGCAGTAATGATCACAATGATCTACAACAAGGGTTTGACTCTTTCCTGCCAGTCAAAGCAGGGCCATACTACTGGGGAGATCATTAATTTTATGTCTGTTGATGCGGAGAGAATTGGGGATTTCATTTGGTATATGCATGGACCATGGATGGTGATTGTGCAAGTTACTCTAGCCTTGCTAATCTTGTATAAAAACGTCGGCCTTGCTTCAGTTGCAGCTTTCTTTGCAACTATAATTGTTATGTTGGCAAATGTTCCACTGGGGAAATGGGAAGAGAAGTTTCAGGGCAAGTTAATGGAATCAAAAGATAAAAGGATGAAGGCAACATCTGAGATTTTAAGAAACATGAGGATTCTCAAGCTTCAGGGATGGGAGATGAAGTTTTTGTCTAAAATTGTAGACCTTCGGAAGAATGAGACGGGGTGGTTGAAAAAATATCTTTACACTTCAGCCATGACCACTTTTTTTTTCTGGGTTGCCCCAACATTTGTGTCCGTGGTCACCTTTGGAACTTGCATGCTTATAGGAATCCCGCTTGAATCAGGGAAGATCTTATCTTCACTTGCAACATTCAGGATACTTCAACAACCCATCTACAGTCTTCCTGACCTAATCTCAATGATAGCTCAGACTAAAGTATCCCTTGACAGAATTACATCCTTTCTTCGTCTAGTTGACCTGCAGAGTGATGTTATCGAGAGGCTTCCAAAAGGTAGTTCTGATACAGCAATTGAGATAGTGGATGGGAATTTCTCTTGGGATTTATCTTCCCCTAATCCAACACTGAAGGATATTAATTTGCGGGTGTGCCGTGGCATGAGGGTTGCTGTTTGTGGTACTGTAGGCTCAGGCAAGTCAAGCTTACTCTCCTGTATATTGGGAGAGGTGCCTAAGATATCTGGTATCCTTAAGCTGTGTGGAACAAAGGCCTATGTTGCTCAGTCTCCTTGGATACAGAGTGGCAAGATAGAAGAGAACATCTTGTTTGGTAAGGAGATGGACAGAGAAAGGTATGAAAGGGTCCTTGATGCATGTTCCTTGAAGAAGGACCTGGAGGTTCTCTCATTTGGTGATCAGACGGTTATAGGTAAGCGGGGAATCAATTTGAGTGGTGGCCAGAAGCAAAGAATACAGATTGCACGTGCACTTTACCAAAACGCTGATATTTATCTGTTTGATGATCCTTTCAGTGCTGTGGATGCTCATACAGGAACCCATCTCTTTAAGGAATGTTTGCTGGGTCTATTGGGTTCGAAAACTGTGATCTATGTTACACATCAAGTAGAGTTCTTACCTGCTGCTGATCTCATACTGGTCATGAAAGATGGAAGAATTACACAAGCTGGAAAGTACAATGAAATTCTCAACTCTGGAACTGATTTTATGGAACTTGTTGGTGCACATAAGAAAGCTTTGTCAGCACTCAATTCTGTAGAGGCAGGGTCACTTTCAGAAAAATCAAGTATCCATGAGGACAGTGATAATATTGGTGGTACTTCTGAAGTTATAGAAAAAGAAGAAAACAAAGGTGGCCAAAATGGTAAAGCAGAGGAGATAGATGGACCAAAAGGTCAGCTTGTTCAAGAAGAGGAGAGAGAGAAAGGTAAAGTTGGGCTATGGGTTTATTGGAAATACATCAGGACAGCATATGGAGGAGCTCTTGTGCCCTTTATATTGTTGTCACAGATTCTCTTTCAGCTGCTTCAGATTGGAAGCAATTATTGGATGGCTTGGTCAAGTCCCGTGTCAGATGATGTGAAACCTGCAGTTAGAGGTTCTACTCTCATGATTGTTTATGTAGCTTTGGCTGTTGGAAGTTCTTTTAGCGTCCTTTCTAGAGCCATGCTTCTTGTAACAGCTACTATACTCTTCAATAAAATGCATTTGAGCCTTTTCCGTGCCCCAATGTCATTCTTTGATGCCACCCCAAGTGGACGGATTCTAAACAGAGCTTCTACAGACCAAAATGCGATCGACACAAACATTCCCATGCAAGTTGGGGCATTTGCCTTCTCATTGATTCGGCTCCGGGGAATTATTGCAGTTATGTCACAGGTTGCATGGCAGGTTTTCATTGTCTTTATTCCTGTGATTGCAACCTGCATCTGGTATCAGGCTCTGGATAAGTGCCAGCTTGGAGATGAAGTCAGGAAGAAAGAAGGAAAGCTAGATTCTACAGTTATTGAGAATGGAGAGAATTGGAGCATGGGTCAGAGGCAACTGGTTTGTCTTGGCCGAGTTCTACTCAAGAAAAGCAAGGTCTTGGTGCCTGATGAAGCTACTGCATCAGTTGATACAGCCACAGAAAATCTGATTCAGCAAACCCTTAGACAACACTTTGTCGATTCTACAGTCATAACTATTGCACATCGAACTACTTCTGTTCTTGATAGTGACAGGGTTCTACTTCTGGATCATGGGCTAATTGAGGAATACGATACCCCAACGAGATTGCTAGAGAACAAGTCGTCATCTTTCGCCAAGCTTGTAGCAGAGTACACTGTGAGGTTAAATTCTAGTCTTGAAAATGCGGGTGATATCTGA 3237 0.4248 MVGLEAMVTYPDIVKKDQSLQVQFLVPDIVYVITGLFLCYSGFLGKNQGKESILREPLLNGGTSISIVESDESKGEETVTPFSKAGFFSLLTFSWIGPLIAEGNKKTLDLGDVPQLDTSNSVVAVFPAFRNKLQCDCGGSNGVTTLKLVKALIFAFWAEILLTALFLLLDILASYVGPYLIDTFVQYLNGRREFKNEGYVLVMVFFLAKLVECLSLRQCSFRLQQVGFRIRAVMITMIYNKGLTLSCQSKQGHTTGEIINFMSVDAERIGDFIWYMHGPWMVIVQVTLALLILYKNVGLASVAAFFATIIVMLANVPLGKWEEKFQGKLMESKDKRMKATSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYLYTSAMTTFFFWVAPTFVSVVTFGTCMLIGIPLESGKILSSLATFRILQQPIYSLPDLISMIAQTKVSLDRITSFLRLVDLQSDVIERLPKGSSDTAIEIVDGNFSWDLSSPNPTLKDINLRVCRGMRVAVCGTVGSGKSSLLSCILGEVPKISGILKLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLDACSLKKDLEVLSFGDQTVIGKRGINLSGGQKQRIQIARALYQNADIYLFDDPFSAVDAHTGTHLFKECLLGLLGSKTVIYVTHQVEFLPAADLILVMKDGRITQAGKYNEILNSGTDFMELVGAHKKALSALNSVEAGSLSEKSSIHEDSDNIGGTSEVIEKEENKGGQNGKAEEIDGPKGQLVQEEEREKGKVGLWVYWKYIRTAYGGALVPFILLSQILFQLLQIGSNYWMAWSSPVSDDVKPAVRGSTLMIVYVALAVGSSFSVLSRAMLLVTATILFNKMHLSLFRAPMSFFDATPSGRILNRASTDQNAIDTNIPMQVGAFAFSLIRLRGIIAVMSQVAWQVFIVFIPVIATCIWYQALDKCQLGDEVRKKEGKLDSTVIENGENWSMGQRQLVCLGRVLLKKSKVLVPDEATASVDTATENLIQQTLRQHFVDSTVITIAHRTTSVLDSDRVLLLDHGLIEEYDTPTRLLENKSSSFAKLVAEYTVRLNSSLENAGDI* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0731 1078 Coils Coil 1078 1078 - -
Vvi19g0731 1078 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 788 938 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0731 1078 ProSitePatterns ABC transporters family signature. 600 614 IPR017871 GO:0005524|GO:0016887
Vvi19g0731 1078 SMART AAA_5 502 675 IPR003593 GO:0016887
Vvi19g0731 1078 MobiDBLite consensus disorder prediction 737 758 - -
Vvi19g0731 1078 CDD ABC_6TM_ABCC_D1 171 449 IPR044746 GO:0140359
Vvi19g0731 1078 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 82 936 - -
Vvi19g0731 1078 FunFam AGAP012735-PA 944 1066 - -
Vvi19g0731 1078 CDD ABCC_MRP_domain1 475 675 - -
Vvi19g0731 1078 Gene3D ABC transporter type 1, transmembrane domain 140 457 IPR036640 GO:0005524|GO:0016020
Vvi19g0731 1078 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 833 1062 IPR003439 GO:0005524
Vvi19g0731 1078 Gene3D - 458 717 IPR027417 -
Vvi19g0731 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 934 1058 IPR027417 -
Vvi19g0731 1078 Pfam ABC transporter transmembrane region 791 937 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0731 1078 Pfam ABC transporter transmembrane region 161 428 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0731 1078 Pfam ABC transporter 493 627 IPR003439 GO:0005524
Vvi19g0731 1078 SUPERFAMILY ABC transporter transmembrane region 150 449 IPR036640 GO:0005524|GO:0016020
Vvi19g0731 1078 FunFam ABC transporter C family member 10 144 457 - -
Vvi19g0731 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 697 IPR027417 -
Vvi19g0731 1078 Pfam ABC transporter 945 993 IPR003439 GO:0005524
Vvi19g0731 1078 SUPERFAMILY ABC transporter transmembrane region 785 937 IPR036640 GO:0005524|GO:0016020
Vvi19g0731 1078 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 475 698 IPR003439 GO:0005524
Vvi19g0731 1078 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 161 441 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0731 1078 Gene3D - 930 1064 IPR027417 -
Vvi19g0731 1078 FunFam ABC transporter C family member 5 460 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0731 Vvi-Chr19 7968064 7973375 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0731 475 720 Calmodulin-binding Proteins AT2G36910 30.112 3.00e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0731 - K05666 vvi:100254999 1661.35