Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0729 ATGGTGGGATTCGAAGCCATGGTTACGTATTCAGATATTGTCAAGAGACACCAGTCCCTACGAATTCAATATTTGGTGCCCGATATTGTCTACGTCATAACTGGTCTGTTCTTGTGCTATTCGGGATTTTTGGGAAAGAATCAAGGCGAGGAATCGATTCTTAGGGAACCCCTTTTGAATGGTAGTACCAGTATAAGTAGAGTGGAGTCTAATAAATCCAAGGGGGAAGCAACTGTGACCCCCTTTTCAAAAGCTAGTTTTTTTAGCCTTCTTACTTTCTCTTGGATCGGTCCCTTGATTGCTGAGGGTAACAAGAAAACATTAGACCTTGAGGATGTTCCTCAGCTTGATACCAGCAACAGCGTTGCGGGGGTCTTTCCAGCATTTAGTAATAAGCTCCAGTGTGATAGTGGTGGAAGTAGTGGAGTGACCACGCTTAAGCTGGTGAAAGCATTGATCTTTGCATGCTGGGCAGAAATCCTATTGACGGCTTTCTTGATTGCTCAGTCTCCTTGGATACAGAGTGGCAAGATAGAAGAGAACATCTTGTTTGGTAAGGAGATGGAAAGAGAAAGGTATGAAAGGGTCCTTGATGCATGTTCCTTAAAGAAGGACCTGGAGGTTCTCTCATTTGGTGATCAGACAGTAATAGGTGAGTGGGGAATCAATATGAGTGGTGGCCAGAAGCAAAGAATACAGATTGCACGTGCGCTCTACCAAAATGCTGATATTTATCTGTTTGATGACCCCTTCAGTGCCGTGGATGCTCATACAGGAACCCATCTCTTTAAGGAATGTTTGCTGGGTCTCTTGGGTTCGAAAACAGTGATTTATGTTACACATCAAGTAGAGTTCTTACCTGCTGCTGATCTCATACTGGTCATGAAAGATGGAAGGGTTACACAAGCAGGAAAGTACAATGAAATTCTCAACTCTGGAACTGATTTTATGGAACTTGTTGGTGCACATAAGAAAGCTTTGTTAGCACTCAATTCTGTAGAGGCAGGGTCACTTTCAGAAAAATTAAGTATCCATGAGGATAGTGATAATATTGGTGGTACTTCTGAAGTAGTTGAAAAAGAAGAAAACAGAGGTGGCCAAAATGGTAAAGCAGAGGAGATAGATGGGACAAAAGGTCAGCTTGTTCAAGAAGAGGAGAGAGAGAAAGGTAAAGTTGGGCTATGGGTTTATTGGAAATACATCAGGACAGCATATGGAGGAGCTCTTGTGCCCTTTATATTGTTGTCACAGATTCTCTTTCAGCTGCTTCAGATTGGAAGCAATTATTGGATGGCTTGGGCAAGTCCCGTGTCAGATGATGTGAAACCTGCAGTTAGAGGTTCTACTCTCATAATTGTTTATGTAGCTTTGGCCGTTGGAAGTTCTTTTTGCGTCCTTTCCAGAGCCATGCTTCTTGTAACAGCTGGTTACAAGACAGCTACTATACTCTTCAATAAAATGCATTTGTGCGTCTTCCGTGCCCCAATGTCATTCTTTGATGCCACCCCAAGTGGGCGAATTCTAAACAGAGCTTCTACAGACCAAAGTACGATCGATACAACCATGCCAATGCAAGTTGGGGCATTTGCCTTCCAATTGATTCAGCTCCTGGGAATTATTGCAGTTATGTCACAGGTTGCATGGCAGGTTTTCATTGTCTTTATTCCTGTGATTGCAACCTGCATCTGGTATCAGCAATATTACATACCTTCAGCACGAGAACTGTCAAGATTGGCCGGAGTATGCAAAGCTCCAGTAATTCAACATTTTTCTGAAACTATAGCAGGATCTATGACCATCAGAAGCTTTGATCAAGAATCTAGATTCAGGGATACAAACATGAAATTGGTAGATGGGTATATACGGCCCAAGTTCAACATTGCTGGTGCAATGGAATGGCTGTGCTTCCGCTTGGATATGCTATCTTCTGCTACATTTGCCTTCTCTTTGGTTTTCTTAATCTCTGTTCCAGAGGGAGTAATTGATCCTGGTATTGCAGGCCTAGCAGTGACATATGGACTTAATTTGAACATGATACAAGCTTGGGTAATATGGAATCTTTGCAATATGGAGAATAAAATTATATCAGTTGAGAGAATACTTCAATACACTTCCATTCCAAGCGAGCCTCCTCTTGTCACAGAAGAAAACAGGCTAGCATGTTCTTGGCCTTCACATGGAGAAGTTGATATTCAGGATTTGCAGGTCCGCTATGCCCCACACATGCCACTTGTATTGAGAGGTCTCACATGCACTTTCCTGGGAGGAATGAAGACTGGCATTGTAGGGCGAACTGGCAGTGGTAAATCAACCCTCATACAGACCCTCTTTCGAATTGTTGAACCTGCCGCTGGTCAGATTATGATAGATGGTACCAACATCTCTTCTATTGGACTACATGATTTGCGGTCTAGACTAAGCATTATCCCTCAGGATCCAACCATGTTTGAAGGGACTGTACGGAGCAACCTTGACCCACTTGAAGAGTACTCAGATGAACAGATTTGGGAGGCTCTGGATAAGTGCCAGCTTGGAGATGAAGTCAGGAAGAAAGAAGGAAAGCTAGATTCTGCAGTTATTGAGAATGGAGAGAATTGGAGCATGGGTCAGAGGCAACTGGTTTGTCTTGGCCGAGTTCTACTGAAGAAAAGCAAGGTCTTAGTGCTTGATGAAGCCACTGCATCAGTTGATACAGCCACGGATAATCTGATTCAGCAAACCCTTAGACAACACTTTGTCGATTCCACAGTCATAACCATTGCACATCGAATTACTTCTGTTCTTGATAGTGACAAGGTTCTACTTCTGGATCATGGGCTTATTGAGGAATACGATACCCCCACCAGATTGCTAGAGAACAAGTCGTCATCTTTTGCAAAGCTTGTAGCAGAGTACACTGTGAGGTCACATTCTAATCTTGAAAATGCGGGTGATATCTGA 2940 0.4303 MVGFEAMVTYSDIVKRHQSLRIQYLVPDIVYVITGLFLCYSGFLGKNQGEESILREPLLNGSTSISRVESNKSKGEATVTPFSKASFFSLLTFSWIGPLIAEGNKKTLDLEDVPQLDTSNSVAGVFPAFSNKLQCDSGGSSGVTTLKLVKALIFACWAEILLTAFLIAQSPWIQSGKIEENILFGKEMERERYERVLDACSLKKDLEVLSFGDQTVIGEWGINMSGGQKQRIQIARALYQNADIYLFDDPFSAVDAHTGTHLFKECLLGLLGSKTVIYVTHQVEFLPAADLILVMKDGRVTQAGKYNEILNSGTDFMELVGAHKKALLALNSVEAGSLSEKLSIHEDSDNIGGTSEVVEKEENRGGQNGKAEEIDGTKGQLVQEEEREKGKVGLWVYWKYIRTAYGGALVPFILLSQILFQLLQIGSNYWMAWASPVSDDVKPAVRGSTLIIVYVALAVGSSFCVLSRAMLLVTAGYKTATILFNKMHLCVFRAPMSFFDATPSGRILNRASTDQSTIDTTMPMQVGAFAFQLIQLLGIIAVMSQVAWQVFIVFIPVIATCIWYQQYYIPSARELSRLAGVCKAPVIQHFSETIAGSMTIRSFDQESRFRDTNMKLVDGYIRPKFNIAGAMEWLCFRLDMLSSATFAFSLVFLISVPEGVIDPGIAGLAVTYGLNLNMIQAWVIWNLCNMENKIISVERILQYTSIPSEPPLVTEENRLACSWPSHGEVDIQDLQVRYAPHMPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPAAGQIMIDGTNISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIWEALDKCQLGDEVRKKEGKLDSAVIENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFVDSTVITIAHRITSVLDSDKVLLLDHGLIEEYDTPTRLLENKSSSFAKLVAEYTVRSHSNLENAGDI* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0729 979 CDD ABCC_MRP_domain2 727 947 - -
Vvi19g0729 979 FunFam ABC transporter C family member 5 374 710 - -
Vvi19g0729 979 CDD ABC_6TM_ABCC_D2 410 704 IPR044726 GO:0140359
Vvi19g0729 979 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 412 692 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0729 979 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 82 165 - -
Vvi19g0729 979 Pfam ABC transporter 747 894 IPR003439 GO:0005524
Vvi19g0729 979 CDD ABCC_MRP_domain1 168 299 - -
Vvi19g0729 979 FunFam Uncharacterized protein 166 334 - -
Vvi19g0729 979 MobiDBLite consensus disorder prediction 349 378 - -
Vvi19g0729 979 Gene3D - 712 965 IPR027417 -
Vvi19g0729 979 SUPERFAMILY ABC transporter transmembrane region 408 710 IPR036640 GO:0005524|GO:0016020
Vvi19g0729 979 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 729 963 IPR003439 GO:0005524
Vvi19g0729 979 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 99 322 IPR003439 GO:0005524
Vvi19g0729 979 Pfam ABC transporter transmembrane region 414 654 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0729 979 ProSitePatterns ABC transporters family signature. 224 238 IPR017871 GO:0005524|GO:0016887
Vvi19g0729 979 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 321 IPR027417 -
Vvi19g0729 979 Pfam ABC transporter 167 251 IPR003439 GO:0005524
Vvi19g0729 979 Gene3D ABC transporter type 1, transmembrane domain 374 710 IPR036640 GO:0005524|GO:0016020
Vvi19g0729 979 SMART AAA_5 139 299 IPR003593 GO:0016887
Vvi19g0729 979 SMART AAA_5 755 940 IPR003593 GO:0016887
Vvi19g0729 979 FunFam ABC transporter C family member 3 712 964 - -
Vvi19g0729 979 Gene3D - 120 334 IPR027417 -
Vvi19g0729 979 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 720 959 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0729 Vvi-Chr19 7936440 7941661 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0729 727 976 Calmodulin-binding Proteins AT2G36910 28.346 1.81e-29 125