Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0728 ATGGAGATAAAAAAAAAACATGGGAGAATCAACGGGGGTGCTCTTGAAAATTATAAGAGGACTAGGTTTTTGTACTATAAGCAAACGTTTGCATGCTGTCAGGGTCTGTCACTGTTGAATTTCTTCTTGTACCAGTCCCTACAAGTTCAATTTTTGGTGCCCGACATTGTCTACGTCATAACTGGTCTGTTCTTGTGCTATTCCGGGTTTTTGGGAAATAATCAAGGTGAGGAATCAATTCTTAGGGAACCACTTTTGAATGGTGGCACCAGTATAAGTATAGTAGAGTCTGATGAATCCAAGGGGGAAGAAACTGTGACCCCCTTTTCAAAAGCTGGTTTTTTTAGCCTTCTTACTTTCTCTTGGATCGGTCCCTTGATTGCTGAGGGTAACAAGAAAACATTAGACCTTGGGGATGTTCCTCAGCTTGATACCAGCAACAGCGTTGTAGCGGTCTTTCCAGCATTTAGAAATAAGCTCCAGTGTGATTGTGGTGGAAGTAATGGAGTGACCACGCTTAAGCTGGTGAAAGCATTGATCTTTGCATTTTGGGCAGAAATCCTATTGACGGCTTTATTCCTACTTTTGGACATTTTAGCTTCTTATGTTGGGCCCTATCTTATTGACACCTTCGTTCAATATCTCAATGGGCGGAGGGAATTCAAAAATGAAGGCTATGTTTTGGTTATGGTCTTTTTTCTTGCGAAGCTTGTTGAGTGCCTTTCACTGAGGCAGTGTTCCTTTAGATTGCAGCAGGTTGGTTTTAGGATCAGAGCAGTAATGATCACAATGATCTACAACAAGGGTTTGACTCTTTCCTGCCAGTCAAAGCAGGGCCATACTACTGGGGAGATCATTAATTTTATGTCTGTTGATGCGGAGAGAATTGGGGATTTCATTTGGTATATGCATGGACCATGGATGGTTATTGTGCAAGTTACTTTAGCCTTGCTAATCTTGTATAAAAACGTCGGCCTTGCTTCAGTTGCAGCTTTCTTTGCAACTATAATTGTTATGTTGGCAAATGTTCCACTGGGGAAATGGGAAGAGAAGTTTCAGGGCAAGTTAATGGAATCAAAAGATAAAAGGATGAAGGCAACATCTGAGATTTTAAGAAACATGAGGATTCTCAAGCTTCAGGGATGGGAGATGAAGTTTTTGTCTAAAATTGTAGACCTTCGGAAGAATGAGACGGGGTGGTTGAAAAAATATCTTTACACTTCAGCCATGACCACTTTTTTTTTCTGGGTTGCCCCAACATTTGTGTCCGTGGTCACCTTTGGAACTTGCATGCTTATAGGAATCCCGCTTGAATCAGGGAAGATCTTATCTTCACTTGCAACATTCAGGATACTTCAACAACCCATCTACCTTCTTCCTGACCTAATCTCAATGATAGTTCAGACTAAAGTATCCCTTGACAGAATTACATCCTTTCTTCGTCTAGTTGACCTGCAGAGTGATGTTATCGAGAGGCTTCCAAAAGGTAGTTCTGATACAGCAATTGAGATAGTGGATGGGAATTTCTCTTGGGATTTATCTTCCCCTAATCCAACACTGAAGGATATTAATTTGCGGGTGTGCCGTGGCATGAGGGTTGCTGTTTGTGGTACTGTAGGCTCAGGCAAGTCAAGCTTACTCTCCTGTATGTTGGGAGAGGTGCCTAAGATATCTGGTATCCTTAAGCTGTGTGGAACAAAGGCATATGTTGCTCAGTCTCCTTGGATACAGAGTGGCAAGATAGAAGAGAACATCTTGTTTGGTAAGGAGATGGACAGAGAAAGGTATGAAAGGGTCCTTGATGCATGTTCCTTGAAGAAGGACCTGGAGGTTCTCTCATTTGGTGATCAGACGGTTATAGGTGAGCGGGGAATCAATTTGAGTGGTGGCCAGAAGCAAAGAATACAGATTGCACGTGCACTTTACCAAAACGCTGATATTTATCTGTTTGATGATCCTTTCAGTGCTGTGGATGCTCATACAGGAACCCATCTCTTTAAGGAATGTTTGCTGGGTCTCTTGGGTTCGAAAACTGTGATCTATGTTACACATCAAGTAGAGTTCTTACCTGCTGCTGATCTCATACTGGTCATGAAAGATGGAAGAATTACACAAGCTGGAAAGTACAATGAAATTCTCAACTCTGGAACTGATTTTATGGAACTTGTTGGTGCACATAAGAAAGCTTTGTCAGCACTCAATTCTGTAGAGACAGGGTCACTTTCAGAAAAATTAAGTATCCATGAGGATAGTGATAATATTGGTGGTACTTCTGAAGTAGTTGAAAAAGAAGAAAACAGCGGTGGCCAAAATGGTAAAGCAGAGGAGATAGATGGGCCAAAAGGTCAGCTTGTTCAAGAAGAGGAGAGAGAGAAAGGTAAAGTTGGGCTATGGGTTTATTGGAATTACATGAGGACAGCATATGGAGGGGCTCTTGTGCCCTTTATACTGTTGTCACAGATTCTCTTTCAGCTGCTTCAAATTGGAAGCAATTATTGGATGGCTTGGGCAAGTCCCGTGTCAGATGATGTGAAACCTGCAGTTAGAGGTTCTACTCTCATAATTGTTTATGTAGCTTTGGCTGTTGGAAGTTCCTTTTGCGTCCTTTCTAGAGCCATGCTTCTTGTAACAGCCGGTTACAAGACAGCTACTATACTCTTCAATAAAATGCATTTGTGCGTCTTCCGTGCCCCAATGTCATTCTTTGATGCCACCCCAAGTGGACGGATTCTAAACAGAGCTTCTACAGACCAAAGTACGATTGATACAAACATTGCAACGCAAGTTGGGGCATGTGCCTTCCAATTGATTCAGCTCCTGGGAATTATTGCAGTAATGTCACAGGTTGCATGGCAGGTTTTCATTGTCTTTATTCCTGTGGCTGCAACCTGCATCTGGTATCAGCAATATTACATACCTTCAGCACGAGAACTATCAAGATTGGCCGGAGTATGCAAAGCTCCAATAATACAACATTTTTCCGAAACTATATCAGGATCTATGACCATCAGGAGCTTTGATCAAGAATCTAGATTCAGGGACACAAACATGAAATTGATAGATGGGTATATACGGCCCAAGTTTAGCATTGCTGGTGCAATAGAATGGCTGTGCTTCCGCTTGGATATGCTATCTTCTGTTACATTTGCCTTCTCTTTGGTTTTCTTAATCTCTGTTCCAGAGGGAGTAATTGATCCTGGTCTTGCAGGCCTAACAGTGACATATGGACTTAATTTGAACATGATACTAGCTTGGGTAATATGGAATTTTTGCAATATGGAGAATATAATTATATCAGTTGAGAGAATACTTCAATACACTTCCATTCCAAGTGAGCCGCCTCTTGTCATAGAAGAAAACAGGCCAGCATGTTCTTGGCCTTCACATGGACAAGTTGATATTCAGGATTTGCAGGTCCGCTATGCCCCACACATGCCACTTGTATTGAGAGGTCTCACATGCACTTTCCTGGGAGGAATGAAGACTGGCATTGTAGGGAGAACTGGCAGTGGTAAATCAACCCTCATACAGACCCTCTTTCGAATTGTTGAACCTGCCGCTGGTCAGATTACGATAGATGGTACCAACATCTCTTCCATTGGACTACATGATTTGCGGTCCAGACTAAGCATTATCCCTCAGGATCCAACCATGTTTGAAGGGACTGTACGGAGCAACCTTGACCCACTTGAAGAGTACTCAGATGAACAGATTTGGGAGGCTCTGGATAAGTGCCAGCTTGGAGATGAAGTCAGGAAGAAAGAAGGAAAGCTAGATTCTGCAGTTACTGAGAATGGAGAGAATTGGAGCATGGGTCAGAGGCAGCTGGTTTGTCTTGGCCGAGTGCTACTCAAGAAAAGCAAGGTCTTGGTGCTTGATGAAGCTACCGCATCAGTTGATACAGCCACTGATAATCTGATTCAGCAAACCCTTAGACAACACTTTGTCGACTCTACAGTCATAACCATTGCACATCGAATTACTTCTGTCCTCGATAGTGACATGGTTCTACTTCTGGATCATGGGCTTGTTGAGGAATATGATACCCCCACCAGATTGCTAGAGAACAAGTCGTCGTCTTTTGCAAAGCTTGTAGCAGAGTACACTGTGAGGTCAAATTCTAGTCTTGAAAACGTGGCTGATACCTGA 4149 0.4256 MEIKKKHGRINGGALENYKRTRFLYYKQTFACCQGLSLLNFFLYQSLQVQFLVPDIVYVITGLFLCYSGFLGNNQGEESILREPLLNGGTSISIVESDESKGEETVTPFSKAGFFSLLTFSWIGPLIAEGNKKTLDLGDVPQLDTSNSVVAVFPAFRNKLQCDCGGSNGVTTLKLVKALIFAFWAEILLTALFLLLDILASYVGPYLIDTFVQYLNGRREFKNEGYVLVMVFFLAKLVECLSLRQCSFRLQQVGFRIRAVMITMIYNKGLTLSCQSKQGHTTGEIINFMSVDAERIGDFIWYMHGPWMVIVQVTLALLILYKNVGLASVAAFFATIIVMLANVPLGKWEEKFQGKLMESKDKRMKATSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYLYTSAMTTFFFWVAPTFVSVVTFGTCMLIGIPLESGKILSSLATFRILQQPIYLLPDLISMIVQTKVSLDRITSFLRLVDLQSDVIERLPKGSSDTAIEIVDGNFSWDLSSPNPTLKDINLRVCRGMRVAVCGTVGSGKSSLLSCMLGEVPKISGILKLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLDACSLKKDLEVLSFGDQTVIGERGINLSGGQKQRIQIARALYQNADIYLFDDPFSAVDAHTGTHLFKECLLGLLGSKTVIYVTHQVEFLPAADLILVMKDGRITQAGKYNEILNSGTDFMELVGAHKKALSALNSVETGSLSEKLSIHEDSDNIGGTSEVVEKEENSGGQNGKAEEIDGPKGQLVQEEEREKGKVGLWVYWNYMRTAYGGALVPFILLSQILFQLLQIGSNYWMAWASPVSDDVKPAVRGSTLIIVYVALAVGSSFCVLSRAMLLVTAGYKTATILFNKMHLCVFRAPMSFFDATPSGRILNRASTDQSTIDTNIATQVGACAFQLIQLLGIIAVMSQVAWQVFIVFIPVAATCIWYQQYYIPSARELSRLAGVCKAPIIQHFSETISGSMTIRSFDQESRFRDTNMKLIDGYIRPKFSIAGAIEWLCFRLDMLSSVTFAFSLVFLISVPEGVIDPGLAGLTVTYGLNLNMILAWVIWNFCNMENIIISVERILQYTSIPSEPPLVIEENRPACSWPSHGQVDIQDLQVRYAPHMPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPAAGQITIDGTNISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIWEALDKCQLGDEVRKKEGKLDSAVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFVDSTVITIAHRITSVLDSDMVLLLDHGLVEEYDTPTRLLENKSSSFAKLVAEYTVRSNSSLENVADT* 1383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0728 1382 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 815 1095 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0728 1382 FunFam ABC transporter C family member 3 1115 1367 - -
Vvi19g0728 1382 MobiDBLite consensus disorder prediction 752 785 - -
Vvi19g0728 1382 CDD ABC_6TM_ABCC_D2 813 1107 IPR044726 GO:0140359
Vvi19g0728 1382 FunFam ABC transporter C family member 5 487 734 - -
Vvi19g0728 1382 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 502 725 IPR003439 GO:0005524
Vvi19g0728 1382 Gene3D - 1115 1368 IPR027417 -
Vvi19g0728 1382 CDD ABC_6TM_ABCC_D1 198 476 IPR044746 GO:0140359
Vvi19g0728 1382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 499 724 IPR027417 -
Vvi19g0728 1382 FunFam ABC transporter C family member 10 171 484 - -
Vvi19g0728 1382 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1132 1366 IPR003439 GO:0005524
Vvi19g0728 1382 SUPERFAMILY ABC transporter transmembrane region 177 476 IPR036640 GO:0005524|GO:0016020
Vvi19g0728 1382 Gene3D - 485 744 IPR027417 -
Vvi19g0728 1382 FunFam ABC transporter C family member 5 777 1113 - -
Vvi19g0728 1382 Pfam ABC transporter 1150 1297 IPR003439 GO:0005524
Vvi19g0728 1382 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 188 468 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0728 1382 CDD ABCC_MRP_domain1 502 702 - -
Vvi19g0728 1382 SMART AAA_5 1158 1349 IPR003593 GO:0016887
Vvi19g0728 1382 SMART AAA_5 529 702 IPR003593 GO:0016887
Vvi19g0728 1382 ProSitePatterns ABC transporters family signature. 627 641 IPR017871 GO:0005524|GO:0016887
Vvi19g0728 1382 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 109 1366 - -
Vvi19g0728 1382 Pfam ABC transporter transmembrane region 188 455 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0728 1382 Pfam ABC transporter transmembrane region 817 1057 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0728 1382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1122 1362 IPR027417 -
Vvi19g0728 1382 CDD ABCC_MRP_domain2 1130 1350 - -
Vvi19g0728 1382 Gene3D ABC transporter type 1, transmembrane domain 167 484 IPR036640 GO:0005524|GO:0016020
Vvi19g0728 1382 Gene3D ABC transporter type 1, transmembrane domain 777 1113 IPR036640 GO:0005524|GO:0016020
Vvi19g0728 1382 SUPERFAMILY ABC transporter transmembrane region 813 1113 IPR036640 GO:0005524|GO:0016020
Vvi19g0728 1382 Pfam ABC transporter 520 654 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0728 Vvi-Chr19 7926080 7935919 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0728 502 731 Calmodulin-binding Proteins AT2G36910 30.830 9.33e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0728 - K05666 vvi:100254999 2424.43