Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi19g0728 | ATGGAGATAAAAAAAAAACATGGGAGAATCAACGGGGGTGCTCTTGAAAATTATAAGAGGACTAGGTTTTTGTACTATAAGCAAACGTTTGCATGCTGTCAGGGTCTGTCACTGTTGAATTTCTTCTTGTACCAGTCCCTACAAGTTCAATTTTTGGTGCCCGACATTGTCTACGTCATAACTGGTCTGTTCTTGTGCTATTCCGGGTTTTTGGGAAATAATCAAGGTGAGGAATCAATTCTTAGGGAACCACTTTTGAATGGTGGCACCAGTATAAGTATAGTAGAGTCTGATGAATCCAAGGGGGAAGAAACTGTGACCCCCTTTTCAAAAGCTGGTTTTTTTAGCCTTCTTACTTTCTCTTGGATCGGTCCCTTGATTGCTGAGGGTAACAAGAAAACATTAGACCTTGGGGATGTTCCTCAGCTTGATACCAGCAACAGCGTTGTAGCGGTCTTTCCAGCATTTAGAAATAAGCTCCAGTGTGATTGTGGTGGAAGTAATGGAGTGACCACGCTTAAGCTGGTGAAAGCATTGATCTTTGCATTTTGGGCAGAAATCCTATTGACGGCTTTATTCCTACTTTTGGACATTTTAGCTTCTTATGTTGGGCCCTATCTTATTGACACCTTCGTTCAATATCTCAATGGGCGGAGGGAATTCAAAAATGAAGGCTATGTTTTGGTTATGGTCTTTTTTCTTGCGAAGCTTGTTGAGTGCCTTTCACTGAGGCAGTGTTCCTTTAGATTGCAGCAGGTTGGTTTTAGGATCAGAGCAGTAATGATCACAATGATCTACAACAAGGGTTTGACTCTTTCCTGCCAGTCAAAGCAGGGCCATACTACTGGGGAGATCATTAATTTTATGTCTGTTGATGCGGAGAGAATTGGGGATTTCATTTGGTATATGCATGGACCATGGATGGTTATTGTGCAAGTTACTTTAGCCTTGCTAATCTTGTATAAAAACGTCGGCCTTGCTTCAGTTGCAGCTTTCTTTGCAACTATAATTGTTATGTTGGCAAATGTTCCACTGGGGAAATGGGAAGAGAAGTTTCAGGGCAAGTTAATGGAATCAAAAGATAAAAGGATGAAGGCAACATCTGAGATTTTAAGAAACATGAGGATTCTCAAGCTTCAGGGATGGGAGATGAAGTTTTTGTCTAAAATTGTAGACCTTCGGAAGAATGAGACGGGGTGGTTGAAAAAATATCTTTACACTTCAGCCATGACCACTTTTTTTTTCTGGGTTGCCCCAACATTTGTGTCCGTGGTCACCTTTGGAACTTGCATGCTTATAGGAATCCCGCTTGAATCAGGGAAGATCTTATCTTCACTTGCAACATTCAGGATACTTCAACAACCCATCTACCTTCTTCCTGACCTAATCTCAATGATAGTTCAGACTAAAGTATCCCTTGACAGAATTACATCCTTTCTTCGTCTAGTTGACCTGCAGAGTGATGTTATCGAGAGGCTTCCAAAAGGTAGTTCTGATACAGCAATTGAGATAGTGGATGGGAATTTCTCTTGGGATTTATCTTCCCCTAATCCAACACTGAAGGATATTAATTTGCGGGTGTGCCGTGGCATGAGGGTTGCTGTTTGTGGTACTGTAGGCTCAGGCAAGTCAAGCTTACTCTCCTGTATGTTGGGAGAGGTGCCTAAGATATCTGGTATCCTTAAGCTGTGTGGAACAAAGGCATATGTTGCTCAGTCTCCTTGGATACAGAGTGGCAAGATAGAAGAGAACATCTTGTTTGGTAAGGAGATGGACAGAGAAAGGTATGAAAGGGTCCTTGATGCATGTTCCTTGAAGAAGGACCTGGAGGTTCTCTCATTTGGTGATCAGACGGTTATAGGTGAGCGGGGAATCAATTTGAGTGGTGGCCAGAAGCAAAGAATACAGATTGCACGTGCACTTTACCAAAACGCTGATATTTATCTGTTTGATGATCCTTTCAGTGCTGTGGATGCTCATACAGGAACCCATCTCTTTAAGGAATGTTTGCTGGGTCTCTTGGGTTCGAAAACTGTGATCTATGTTACACATCAAGTAGAGTTCTTACCTGCTGCTGATCTCATACTGGTCATGAAAGATGGAAGAATTACACAAGCTGGAAAGTACAATGAAATTCTCAACTCTGGAACTGATTTTATGGAACTTGTTGGTGCACATAAGAAAGCTTTGTCAGCACTCAATTCTGTAGAGACAGGGTCACTTTCAGAAAAATTAAGTATCCATGAGGATAGTGATAATATTGGTGGTACTTCTGAAGTAGTTGAAAAAGAAGAAAACAGCGGTGGCCAAAATGGTAAAGCAGAGGAGATAGATGGGCCAAAAGGTCAGCTTGTTCAAGAAGAGGAGAGAGAGAAAGGTAAAGTTGGGCTATGGGTTTATTGGAATTACATGAGGACAGCATATGGAGGGGCTCTTGTGCCCTTTATACTGTTGTCACAGATTCTCTTTCAGCTGCTTCAAATTGGAAGCAATTATTGGATGGCTTGGGCAAGTCCCGTGTCAGATGATGTGAAACCTGCAGTTAGAGGTTCTACTCTCATAATTGTTTATGTAGCTTTGGCTGTTGGAAGTTCCTTTTGCGTCCTTTCTAGAGCCATGCTTCTTGTAACAGCCGGTTACAAGACAGCTACTATACTCTTCAATAAAATGCATTTGTGCGTCTTCCGTGCCCCAATGTCATTCTTTGATGCCACCCCAAGTGGACGGATTCTAAACAGAGCTTCTACAGACCAAAGTACGATTGATACAAACATTGCAACGCAAGTTGGGGCATGTGCCTTCCAATTGATTCAGCTCCTGGGAATTATTGCAGTAATGTCACAGGTTGCATGGCAGGTTTTCATTGTCTTTATTCCTGTGGCTGCAACCTGCATCTGGTATCAGCAATATTACATACCTTCAGCACGAGAACTATCAAGATTGGCCGGAGTATGCAAAGCTCCAATAATACAACATTTTTCCGAAACTATATCAGGATCTATGACCATCAGGAGCTTTGATCAAGAATCTAGATTCAGGGACACAAACATGAAATTGATAGATGGGTATATACGGCCCAAGTTTAGCATTGCTGGTGCAATAGAATGGCTGTGCTTCCGCTTGGATATGCTATCTTCTGTTACATTTGCCTTCTCTTTGGTTTTCTTAATCTCTGTTCCAGAGGGAGTAATTGATCCTGGTCTTGCAGGCCTAACAGTGACATATGGACTTAATTTGAACATGATACTAGCTTGGGTAATATGGAATTTTTGCAATATGGAGAATATAATTATATCAGTTGAGAGAATACTTCAATACACTTCCATTCCAAGTGAGCCGCCTCTTGTCATAGAAGAAAACAGGCCAGCATGTTCTTGGCCTTCACATGGACAAGTTGATATTCAGGATTTGCAGGTCCGCTATGCCCCACACATGCCACTTGTATTGAGAGGTCTCACATGCACTTTCCTGGGAGGAATGAAGACTGGCATTGTAGGGAGAACTGGCAGTGGTAAATCAACCCTCATACAGACCCTCTTTCGAATTGTTGAACCTGCCGCTGGTCAGATTACGATAGATGGTACCAACATCTCTTCCATTGGACTACATGATTTGCGGTCCAGACTAAGCATTATCCCTCAGGATCCAACCATGTTTGAAGGGACTGTACGGAGCAACCTTGACCCACTTGAAGAGTACTCAGATGAACAGATTTGGGAGGCTCTGGATAAGTGCCAGCTTGGAGATGAAGTCAGGAAGAAAGAAGGAAAGCTAGATTCTGCAGTTACTGAGAATGGAGAGAATTGGAGCATGGGTCAGAGGCAGCTGGTTTGTCTTGGCCGAGTGCTACTCAAGAAAAGCAAGGTCTTGGTGCTTGATGAAGCTACCGCATCAGTTGATACAGCCACTGATAATCTGATTCAGCAAACCCTTAGACAACACTTTGTCGACTCTACAGTCATAACCATTGCACATCGAATTACTTCTGTCCTCGATAGTGACATGGTTCTACTTCTGGATCATGGGCTTGTTGAGGAATATGATACCCCCACCAGATTGCTAGAGAACAAGTCGTCGTCTTTTGCAAAGCTTGTAGCAGAGTACACTGTGAGGTCAAATTCTAGTCTTGAAAACGTGGCTGATACCTGA | 4149 | 0.4256 | MEIKKKHGRINGGALENYKRTRFLYYKQTFACCQGLSLLNFFLYQSLQVQFLVPDIVYVITGLFLCYSGFLGNNQGEESILREPLLNGGTSISIVESDESKGEETVTPFSKAGFFSLLTFSWIGPLIAEGNKKTLDLGDVPQLDTSNSVVAVFPAFRNKLQCDCGGSNGVTTLKLVKALIFAFWAEILLTALFLLLDILASYVGPYLIDTFVQYLNGRREFKNEGYVLVMVFFLAKLVECLSLRQCSFRLQQVGFRIRAVMITMIYNKGLTLSCQSKQGHTTGEIINFMSVDAERIGDFIWYMHGPWMVIVQVTLALLILYKNVGLASVAAFFATIIVMLANVPLGKWEEKFQGKLMESKDKRMKATSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYLYTSAMTTFFFWVAPTFVSVVTFGTCMLIGIPLESGKILSSLATFRILQQPIYLLPDLISMIVQTKVSLDRITSFLRLVDLQSDVIERLPKGSSDTAIEIVDGNFSWDLSSPNPTLKDINLRVCRGMRVAVCGTVGSGKSSLLSCMLGEVPKISGILKLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLDACSLKKDLEVLSFGDQTVIGERGINLSGGQKQRIQIARALYQNADIYLFDDPFSAVDAHTGTHLFKECLLGLLGSKTVIYVTHQVEFLPAADLILVMKDGRITQAGKYNEILNSGTDFMELVGAHKKALSALNSVETGSLSEKLSIHEDSDNIGGTSEVVEKEENSGGQNGKAEEIDGPKGQLVQEEEREKGKVGLWVYWNYMRTAYGGALVPFILLSQILFQLLQIGSNYWMAWASPVSDDVKPAVRGSTLIIVYVALAVGSSFCVLSRAMLLVTAGYKTATILFNKMHLCVFRAPMSFFDATPSGRILNRASTDQSTIDTNIATQVGACAFQLIQLLGIIAVMSQVAWQVFIVFIPVAATCIWYQQYYIPSARELSRLAGVCKAPIIQHFSETISGSMTIRSFDQESRFRDTNMKLIDGYIRPKFSIAGAIEWLCFRLDMLSSVTFAFSLVFLISVPEGVIDPGLAGLTVTYGLNLNMILAWVIWNFCNMENIIISVERILQYTSIPSEPPLVIEENRPACSWPSHGQVDIQDLQVRYAPHMPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLFRIVEPAAGQITIDGTNISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIWEALDKCQLGDEVRKKEGKLDSAVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFVDSTVITIAHRITSVLDSDMVLLLDHGLVEEYDTPTRLLENKSSSFAKLVAEYTVRSNSSLENVADT* | 1383 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi19g0728 | 1382 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 815 | 1095 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vvi19g0728 | 1382 | FunFam | ABC transporter C family member 3 | 1115 | 1367 | - | - | |
Vvi19g0728 | 1382 | MobiDBLite | consensus disorder prediction | 752 | 785 | - | - | |
Vvi19g0728 | 1382 | CDD | ABC_6TM_ABCC_D2 | 813 | 1107 | IPR044726 | GO:0140359 | |
Vvi19g0728 | 1382 | FunFam | ABC transporter C family member 5 | 487 | 734 | - | - | |
Vvi19g0728 | 1382 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 502 | 725 | IPR003439 | GO:0005524 | |
Vvi19g0728 | 1382 | Gene3D | - | 1115 | 1368 | IPR027417 | - | |
Vvi19g0728 | 1382 | CDD | ABC_6TM_ABCC_D1 | 198 | 476 | IPR044746 | GO:0140359 | |
Vvi19g0728 | 1382 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 499 | 724 | IPR027417 | - | |
Vvi19g0728 | 1382 | FunFam | ABC transporter C family member 10 | 171 | 484 | - | - | |
Vvi19g0728 | 1382 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1132 | 1366 | IPR003439 | GO:0005524 | |
Vvi19g0728 | 1382 | SUPERFAMILY | ABC transporter transmembrane region | 177 | 476 | IPR036640 | GO:0005524|GO:0016020 | |
Vvi19g0728 | 1382 | Gene3D | - | 485 | 744 | IPR027417 | - | |
Vvi19g0728 | 1382 | FunFam | ABC transporter C family member 5 | 777 | 1113 | - | - | |
Vvi19g0728 | 1382 | Pfam | ABC transporter | 1150 | 1297 | IPR003439 | GO:0005524 | |
Vvi19g0728 | 1382 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 188 | 468 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vvi19g0728 | 1382 | CDD | ABCC_MRP_domain1 | 502 | 702 | - | - | |
Vvi19g0728 | 1382 | SMART | AAA_5 | 1158 | 1349 | IPR003593 | GO:0016887 | |
Vvi19g0728 | 1382 | SMART | AAA_5 | 529 | 702 | IPR003593 | GO:0016887 | |
Vvi19g0728 | 1382 | ProSitePatterns | ABC transporters family signature. | 627 | 641 | IPR017871 | GO:0005524|GO:0016887 | |
Vvi19g0728 | 1382 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 109 | 1366 | - | - | |
Vvi19g0728 | 1382 | Pfam | ABC transporter transmembrane region | 188 | 455 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vvi19g0728 | 1382 | Pfam | ABC transporter transmembrane region | 817 | 1057 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Vvi19g0728 | 1382 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1122 | 1362 | IPR027417 | - | |
Vvi19g0728 | 1382 | CDD | ABCC_MRP_domain2 | 1130 | 1350 | - | - | |
Vvi19g0728 | 1382 | Gene3D | ABC transporter type 1, transmembrane domain | 167 | 484 | IPR036640 | GO:0005524|GO:0016020 | |
Vvi19g0728 | 1382 | Gene3D | ABC transporter type 1, transmembrane domain | 777 | 1113 | IPR036640 | GO:0005524|GO:0016020 | |
Vvi19g0728 | 1382 | SUPERFAMILY | ABC transporter transmembrane region | 813 | 1113 | IPR036640 | GO:0005524|GO:0016020 | |
Vvi19g0728 | 1382 | Pfam | ABC transporter | 520 | 654 | IPR003439 | GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi19g0728 | Vvi-Chr19 | 7926080 | 7935919 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi19g0728 | 502 | 731 | Calmodulin-binding Proteins | AT2G36910 | 30.830 | 9.33e-24 | 107 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi19g0728 | - | K05666 | vvi:100254999 | 2424.43 |