Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0727 ATGGCGGGTCTTGAAGCCATGGTCCCGTACTCAGGTATTGGATTTCTGCTAAACCCAACCTCTTTACGTGCCTTTTCCGCTTCTTTCCATCTTGTCTTGTTGCTTTTCCTATTTGTATCATGGGCGTGCAAGAAAATCAAGATGGGTGCTCTTGAGAATTGTAAGAGGACTGGGTTTTCGTACTATAAGCAAATATTTGTTTGTTGTCTGGGTCTGTCAGTGTTTAACCTTGCCTTGTTCTTTTTGAACTACTTTTATTGGTATAAGAATGGTTGGTCTGATGAACAGCTGGTGACCCTTTCGGATTTAGCGCTCAGAACATTTGCTTGGGCTACAGTTTGTGTATATTTGCACACTCAATTCCTTGGATCTGTTGAACCAAAGTTCCCGTTTTCGTTAAGAGTTTGGTGGGGATTTTACTTCTCCATCTCTTGTTATTGCCTTGTTATAGATATTGTTAAGCAACACCAGTCCCAACCAATTCAATTTTTGGTGCCTGATGCTGTCTACGTCATAACTGGTCTGTTCTTGTGCTATTTGGGTTTGTGGGGGAAGAATCAAGGTGAAGAATCAATTCTTAGGGAATCCCTTTTGCATGGTAGTGCCAGTATAAGTACTAGAGTGGCGTCAAATAAATCAAAGGGGGAAGAAACTGTGACCCCGTTCTCCAATGCTGGTGTTTTTAGTCTTCTTACTTTCTCTTGGATGGGTCCCTTGATCGCCCTTGGTAATAAGAAAACATTAGACCTTGAGGATGTTCCTCAGCTTGACGCTGTCAACAGTGTTGTTGGGGGCTTTCCAATTTTTAGAAGTAAGCTCGAGGGTGATGGTGGTGGCGGTAGTGGAGTGACCACGCTTAAGCTGGTGAAAGCAATGATCCTCTCAGCATGGGCAGAAATACTATTGTCGGCTTTATTCGCCCTTCTTTACACGTTAGCTTCTTATGTTGGTCCCTATCTTATTGACACCTTCGTTCAGTACCTCAATGGCCAGCGGCAATTCAAAAATGAAGGCTACTTTCTGGTTTCAGCTTTTCTTGTTGCAAAGCTTGTTGAATGCCTTTCAATGAGGCACTGGTTCTTTAGATTACAGCAGGTTGGAATTAGGATGAGAGCAGTACTGGTCACAAAGATCTACAACAAAGTTTTGGCTGTTTCATACCACTCAAAGCAGTGTCATACTAGTGGGGAGATCATCAATTTCATTTCTGTTGATGCTGAGAGAATTGGTGACTTTGGTTGGTACATGCACGATCCATGGATGGTGACTTTGCAAGTTGCTTTGGCATTGTTGATCTTGTATAAAAATCTTGGTCTTGCTTCAATTGCAGCTTTCTTTGCAACAGTAATTATTATGTTGGCAAATGTTCCACTGGCGAAATTCCAAGAGAAGTTCCAAGACAAGCTAATGGAATCGAAAGATAAAAGGATGAAGTCAACATCCGAGATCTTGAGGAACATGAGGATTCTCAAGCTTCAGGGATGGGAAATGAAGTTTTTATCTAAAATTGTTGACTTACGGAAGAATGAGACAGGGTGGTTGAAAAAATATGTTTACACTTTAGCCATCACCACTTTTGTTTTCTGGGTTGGCCCAATATTTGTGTCTGTGGTCTCCTTTGGAACTGCTATGCTTATGGGGATCCCACTTGAATCAGGGAAGATCTTATCTTCACTTGCAACATTCAGGATACTTCAAGAGCCCATTTACAATCTTCCTGACACTATCTCGATGATAGCTCAGACAAAAGTTTCCCTTGATAGAATTGCATCCTTTCTTCGTCTTGATGACTTGCAGCCTGATGTTGTCGAGAAGCTTCCAAAAGGTACTTCTAGCACAGCAATTGAGATAGTAAATGGGAATTTCTCTTGGGATTTATCTTCCCCTCATCCAACATTGAAGGATATTAATTTGCAAGTGCATCATGGCATGAGGGTTGCTGTTTGTGGTGCTGTTGGCTCAGGAAAGTCAAGCTTACTTTCTTGTATCCTGGGTGAAGTGCCCAAGATATCTGGTACCCTTAAGCTGAGTGGAACAAAGGCATATGTTGCACAGTCGCCTTGGATACAGGGTGGCAAGATAGAAGAAAACATCTTGTTTGGCAAGGAGATGGACAGAGAAAGGTATGAAAGGGTCCTGGATGCATGTACCTTGAAGAAGGACCTGGAGATCCTCCCATTTGGTGATCAGACGGTTATAGGTGAGCGAGGAATCAATTTGAGTGGTGGGCAGAAGCAAAGAATTCAGATCGCACGTGCACTTTACCAAGATGCGGATATTTATCTGTTTGATGATCCTTTTAGTGCTGTTGATGCTCATACAGGCACCCATCTTTTCAAGGAATGTTTGCTGGGCCTCTTGGATTCAAAAACAGTGGTTTATGTCACTCATCAAGTGGAGTTCTTACCTGCTGCTGATCTCATATTGGTCATGAAAGAAGGAAGAATTACACAGGCTGGAAAGTACAATGACATTCTCAACTATGGAAGTGATTTTGTGGAGCTTGTGGGTGCACATAAGAAAGCCTTATCAGCACTTGAATCCATAGAGGCAGAAAAATCAAGTATCATGAGTGAGAACAGTGTTGATACAGGAAGTACTTCTGAGGTTGTGCCAAAAGAAGAAAACAGAAATGGGCAAACTGGAAACATAGAAGGCACGGATGGGCCAAAAGCCCAGCTCGTTCAAGAAGAGGAGAGAGAGAAAGGTAAAGTTGGATTTTCAGTTTATTGGAAATATATCACAACAGCATATGGAGGAGCTCTTGTGCCCTTTATATTGCTGTCACAAATTCTCTTTCAGCTGCTTCAAATTGGAAGCAATTATTGGATGGCTTGGGCAACACCTGTGTCAGAGGATGTGAAACCTGCGGTTGGTGGCTCTACTCTTATACTTGTCTATGTAGCTTTGGCCATTGGAAGTTCTCTTTGTGTCCTTTCCAGAGCCATGCTTGTTGTAACAGCTGGTTACAGGACAGCTACTATACTCTTCAATAAAATGCATTTGAGCATTTTCCGTGCCCCAATGTCATTCTTTGATGCCACCCCAAGTGGACGAATCCTAAACAGAGCTTCTACAGACCAAAGTGCAGTGGACATGGATATTCCAATGGTAATATGGAAATGTGCTTTCTCATTCATACAGCTCCTGGGAATTATTGCAGTCATGTCCCAAGTCGTATGGCAGGTTTTCATTGTTTTTGTCCCCATGATTGCAACTTGCATCTGGTATCAGCGATATTATATATCATCAGCCCGAGAACTGGCAAGATTGGTCGGAGTATGCAAAGCTCCAGTAATACAGCATTTTTCTGAAACCATCTCAGGATCCACAACCATCAGGAGCTTTGATCAAGAGTCAAGATTCAGGGACACAAACATGAAACTTATAGATGGGTATACCAGGCCCAAGTTCAACAGTGCTGCTGCAATGGAGTGGTTGTGCTTCCGCTTGGATGTGCTATCTTCTATTACATTTGCCTTCTCTTTGGTTTTCTTGATCTCTATTCCAGAGGGAGCAATTGATCCTGGCATTGCGGGCTTAGCAGTGACATATGGACTTAATTTAAACACGTTACAAGCTTGGGTGGTATGGAATCTTTGCAATATGGAGAATAAGATTATATCAGTTGAGAGAATGCTTCAATACACTTCCATTCCAAGTGAGCCTCCCCTTGTCATGGAAGGAAACAAGCCAGCATGTTCTTGGCCTTCACATGGAGAAGTTGATATTCGTGATTTGCAGGTCCGCTATGCCCCACACCTGCCACTTGTATTGAGAGGTCTCACATGCAATTTCCCAGGAGGGATGAAGACCGGCATAGTAGGCCGAACCGGTAGCGGCAAATCAACCCTCATACAGACCCTCTTTCGAATTGTTGAACCTACCGCTGGTGAAATCATGATAGATGGTACCAACATCTCCTTGATTGGGCTACATGATTTGCGGTCCAGACTAAGCATTATCCCTCAGGATCCAACCATGTTTGAAGGGACTGTACGGAGCAACCTTGACCCACTGGAAGAGTATTCAGATGAACAGATTTGGGAGGCCCTGGATAAGTGTCAGCTTGGTGATGAAGTCAGGAAGAAAGAAGGAAAGCTTGATTCTGCAGTTAATGAGAATGGAGAGAATTGGAGTATGGGTCAGAGGCAGCTGGTTTGTCTCGGACGAGTGCTACTCAAGAAAAGCAAGGTCTTGGTGCTTGATGAAGCTACTGCATCAGTTGATACAGCCACTGATAATCTGATTCAGCAAACCCTTAGACAACACTTTGTTGATTCTACGGTCATAACCATTGCGCATCGAATAACTTCTGTTCTAGATAGTGACATGGTTCTACTTCTAGATCATGGACTTATTGAGGAACATGATACCCCCGCAAGATTGCTAGAGAACAAGTCGTCATCTTTCGCAAAGCTTGTAGCAGAGTACACCGTGAGGTCAAAATCTAACTAG 4458 0.43 MAGLEAMVPYSGIGFLLNPTSLRAFSASFHLVLLLFLFVSWACKKIKMGALENCKRTGFSYYKQIFVCCLGLSVFNLALFFLNYFYWYKNGWSDEQLVTLSDLALRTFAWATVCVYLHTQFLGSVEPKFPFSLRVWWGFYFSISCYCLVIDIVKQHQSQPIQFLVPDAVYVITGLFLCYLGLWGKNQGEESILRESLLHGSASISTRVASNKSKGEETVTPFSNAGVFSLLTFSWMGPLIALGNKKTLDLEDVPQLDAVNSVVGGFPIFRSKLEGDGGGGSGVTTLKLVKAMILSAWAEILLSALFALLYTLASYVGPYLIDTFVQYLNGQRQFKNEGYFLVSAFLVAKLVECLSMRHWFFRLQQVGIRMRAVLVTKIYNKVLAVSYHSKQCHTSGEIINFISVDAERIGDFGWYMHDPWMVTLQVALALLILYKNLGLASIAAFFATVIIMLANVPLAKFQEKFQDKLMESKDKRMKSTSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYVYTLAITTFVFWVGPIFVSVVSFGTAMLMGIPLESGKILSSLATFRILQEPIYNLPDTISMIAQTKVSLDRIASFLRLDDLQPDVVEKLPKGTSSTAIEIVNGNFSWDLSSPHPTLKDINLQVHHGMRVAVCGAVGSGKSSLLSCILGEVPKISGTLKLSGTKAYVAQSPWIQGGKIEENILFGKEMDRERYERVLDACTLKKDLEILPFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGTHLFKECLLGLLDSKTVVYVTHQVEFLPAADLILVMKEGRITQAGKYNDILNYGSDFVELVGAHKKALSALESIEAEKSSIMSENSVDTGSTSEVVPKEENRNGQTGNIEGTDGPKAQLVQEEEREKGKVGFSVYWKYITTAYGGALVPFILLSQILFQLLQIGSNYWMAWATPVSEDVKPAVGGSTLILVYVALAIGSSLCVLSRAMLVVTAGYRTATILFNKMHLSIFRAPMSFFDATPSGRILNRASTDQSAVDMDIPMVIWKCAFSFIQLLGIIAVMSQVVWQVFIVFVPMIATCIWYQRYYISSARELARLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRDTNMKLIDGYTRPKFNSAAAMEWLCFRLDVLSSITFAFSLVFLISIPEGAIDPGIAGLAVTYGLNLNTLQAWVVWNLCNMENKIISVERMLQYTSIPSEPPLVMEGNKPACSWPSHGEVDIRDLQVRYAPHLPLVLRGLTCNFPGGMKTGIVGRTGSGKSTLIQTLFRIVEPTAGEIMIDGTNISLIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIWEALDKCQLGDEVRKKEGKLDSAVNENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFVDSTVITIAHRITSVLDSDMVLLLDHGLIEEHDTPARLLENKSSSFAKLVAEYTVRSKSN* 1486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0727 1485 Gene3D - 1226 1478 IPR027417 -
Vvi19g0727 1485 FunFam ABC transporter C family member 10 284 597 - -
Vvi19g0727 1485 FunFam ABC transporter C family member 3 1225 1477 - -
Vvi19g0727 1485 CDD ABCC_MRP_domain1 615 815 - -
Vvi19g0727 1485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 837 IPR027417 -
Vvi19g0727 1485 SUPERFAMILY ABC transporter transmembrane region 295 600 IPR036640 GO:0005524|GO:0016020
Vvi19g0727 1485 FunFam ABC transporter C family member 5 887 1223 - -
Vvi19g0727 1485 CDD ABC_6TM_ABCC_D2 923 1217 IPR044726 GO:0140359
Vvi19g0727 1485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1232 1472 IPR027417 -
Vvi19g0727 1485 Gene3D ABC transporter type 1, transmembrane domain 887 1223 IPR036640 GO:0005524|GO:0016020
Vvi19g0727 1485 Gene3D ABC transporter type 1, transmembrane domain 281 597 IPR036640 GO:0005524|GO:0016020
Vvi19g0727 1485 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1244 1476 IPR003439 GO:0005524
Vvi19g0727 1485 MobiDBLite consensus disorder prediction 857 887 - -
Vvi19g0727 1485 Gene3D - 598 862 IPR027417 -
Vvi19g0727 1485 SMART AAA_5 642 815 IPR003593 GO:0016887
Vvi19g0727 1485 SMART AAA_5 1268 1453 IPR003593 GO:0016887
Vvi19g0727 1485 CDD ABC_6TM_ABCC_D1 302 589 IPR044746 GO:0140359
Vvi19g0727 1485 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 222 1476 - -
Vvi19g0727 1485 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 838 IPR003439 GO:0005524
Vvi19g0727 1485 MobiDBLite consensus disorder prediction 857 895 - -
Vvi19g0727 1485 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 301 581 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0727 1485 Pfam ABC transporter transmembrane region 301 568 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0727 1485 Pfam ABC transporter transmembrane region 925 1168 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi19g0727 1485 Pfam ABC transporter 1260 1407 IPR003439 GO:0005524
Vvi19g0727 1485 ProSitePatterns ABC transporters family signature. 740 754 IPR017871 GO:0005524|GO:0016887
Vvi19g0727 1485 Pfam ABC transporter 633 767 IPR003439 GO:0005524
Vvi19g0727 1485 SUPERFAMILY ABC transporter transmembrane region 923 1223 IPR036640 GO:0005524|GO:0016020
Vvi19g0727 1485 CDD ABCC_MRP_domain2 1240 1460 - -
Vvi19g0727 1485 FunFam ABC transporter C family member 5 600 847 - -
Vvi19g0727 1485 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 925 1205 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0727 Vvi-Chr19 7911343 7917664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0727 593 864 Calmodulin-binding Proteins AT2G36910 29.431 2.04e-26 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0727 - K05666 vvi:100252075 2890.14