Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0721 ATGGATCAGCCGGAAGCAAAGCAACAAAAGATGAGTTTGGATTGGGAAGAGTCATTTAACCTTTTTGAAGAAGCGGTTGCTTCTGAGAGTACTGCTATGCAAATTCAAGCCATAATCAAGGTCGCCCAGCTTTCTAATTATGCACCGGACAATGTACTAACACGTGCGGTGCCAATCCTCACACAGCTTCTTGGCGGTAGCTCCAGTCCATTGGTTCAAGAAGCCGCTGCTTATTGCTTAAAATGCATAGCCCATCAAGGTGATCTGGATGATCGGTTGGCAACACTCATTGGGCAGTCTGGTGCTATTCCTATTACACTCAGACTGTTGCAGCATTCCCACGGTGGCCTTCAGGGAGTTCTAGTGAAATTTCTTTGGAGCATTGTTACATTTGGTACACACAATAGGGTAATCGTAGTTAGAAATGGTGGATTGGAGGTCATAATCAATATGTTAGGGTCATGCGTGGGTAGTACGAGGCGGCACTTGTTAGAGATATTAAGCGCATTGGTGTGGTTGAGAGAGGTGAGGAGGGTCATAACCAGTCCAGAAGGCCTTCAGTTTCTTGTTGAGGCGGTCAAGTTCGGTGGCATGGCCTCTAGGGAAAGGGCTGCTTATGCGGTGGGGTCGCTTGGAGTGGCAAGAAGCGCTAGGACTGTGCTTGTTGATTTGGGAGCAATGCAGGCGCTTATGGAGTTGCTCAGAGAGGGAGACATCTCGGCAAAATTGGTAGCTGGCAATGCACTGGGGGTGATCTCAGCGAACGTGGACTGCATCAGGCCACTTGCTCAAGCCGGGGCTATTCCTTTGTACGCAGAGCTGCTCCGGGGAGCAGAGCCCGTGGGGAAGGAGATTGCGGAGGATGTGTTTTGTGTCTTGGCTATTGCAGAAGTGAATGCAGTCTCAATCGCTCAGCACTTGGCGCAAATCCTTAGAGAAAACGATGATATTGCCAAGGCTGCAGCTGCCGAAATTTTAGGCCATCTCTCGAGATACAAACATTCAGTGCCCTTTATCACAAACTCTGGTGCGATTCCGGTTCTTGTTGAGCTTCTGAGGCAGGGGAGTGATGAAGTGAAAGAGAAGGCATCAGGGGCCATTGCTCAGTTGAGCTATAATGCAGGAGACCGAGCAGCCCTAGCGGACGCCGGCGCAATTCCGATTCTGATGGATTTATTGGGTGATGATCAATCAGAGGAGCTAAGAAATAAAGCTGCAGAAGCTCTCATCAGTTTTTCTGAAGACCCTTCACAGCGTGACAGAATATCTGAGGCATTCAACATTACTTCATTCCAGGACATCCACAACAGACTGGCACAGCTTCGTGCTCCCGATAATAATGGCGAGCAAATGGCCAGACCTTCGAGACAGATGATGAGCATGGAGCAGCTTCCTTGGGACCCTAATATTCTCTAA 1416 0.4908 MDQPEAKQQKMSLDWEESFNLFEEAVASESTAMQIQAIIKVAQLSNYAPDNVLTRAVPILTQLLGGSSSPLVQEAAAYCLKCIAHQGDLDDRLATLIGQSGAIPITLRLLQHSHGGLQGVLVKFLWSIVTFGTHNRVIVVRNGGLEVIINMLGSCVGSTRRHLLEILSALVWLREVRRVITSPEGLQFLVEAVKFGGMASRERAAYAVGSLGVARSARTVLVDLGAMQALMELLREGDISAKLVAGNALGVISANVDCIRPLAQAGAIPLYAELLRGAEPVGKEIAEDVFCVLAIAEVNAVSIAQHLAQILRENDDIAKAAAAEILGHLSRYKHSVPFITNSGAIPVLVELLRQGSDEVKEKASGAIAQLSYNAGDRAALADAGAIPILMDLLGDDQSEELRNKAAEALISFSEDPSQRDRISEAFNITSFQDIHNRLAQLRAPDNNGEQMARPSRQMMSMEQLPWDPNIL* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0721 471 Gene3D - 16 301 IPR011989 -
Vvi19g0721 471 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 320 425 - -
Vvi19g0721 471 SMART arm_5 132 172 IPR000225 GO:0005515
Vvi19g0721 471 SMART arm_5 45 85 IPR000225 GO:0005515
Vvi19g0721 471 SMART arm_5 332 372 IPR000225 GO:0005515
Vvi19g0721 471 SMART arm_5 373 414 IPR000225 GO:0005515
Vvi19g0721 471 SMART arm_5 255 295 IPR000225 GO:0005515
Vvi19g0721 471 SMART arm_5 214 254 IPR000225 GO:0005515
Vvi19g0721 471 SMART arm_5 90 130 IPR000225 GO:0005515
Vvi19g0721 471 ProSiteProfiles HEAT repeat profile. 385 424 IPR021133 -
Vvi19g0721 471 Pfam HEAT repeats 305 409 - -
Vvi19g0721 471 Gene3D - 305 458 IPR011989 -
Vvi19g0721 471 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 343 385 IPR000225 GO:0005515
Vvi19g0721 471 SUPERFAMILY ARM repeat 12 422 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0721 Vvi-Chr19 7842956 7844371 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0721 227 424 U-box Gene Family AT2G23140 27.941 2.60e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0721 - - vvi:100253827 887.1