Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0720 ATGAGTACAAGTTGGGAAGAGTCATTCGAACTTTTTGAAAAAGTGGTTGCGTCCGGCAGAAATGCTATGCAAATTCGAGCCATAATCAAGCTTGCCCGCCTCTCTAATTCTGCACCGGCCCATGTACTAACCCGCACCGTGCCGATCCTCACGCGGCTTCTTGGTAGCAGTTCTAGTCCATCCGTCCAAGGGGCCTCTGCATATTGCTTAAAATGCATAGCTCATCAAGGTGATGGGGATCGGATGGCAATACTCATTGGGCAGTATGGTGCTATTCCTATAGCACTGAGGCTGCTGCAGCATTCTGAAGGTAGTTTTCAGAGGGTTTTGGTAAAATGTCTTTGGAGCCTTGTCATATTTGGAAAACATAATCGGGTAATTCTCGTTAGAAATGGTGGATTGGAGATCATAATCCGTATGTTGGGTTCATACACAGGTAGGATGAGGCAGTATTTGTTAGAAATATTAAGTGCATTGGCATTGTTGCGGGAGGTTAGAAGGGTGATAATCAGTCTTGAAGGCCTTCGGTTTCTCGTTCAGGCTGTCAAGTTTGGTGGCATGGCCTCTAGAGAAAGGGCTGCCCATGCGGTTGGGTGTCTTGGAGTGGCAAAAAAGGCGAGGCGTGTGCTTGTTGATTTGGGAGCAATGCACATGCTCATTGAGTTGTTCAGAGAAGGAGATGCTTGCACAAAATTGGTAGCTGGTAATGCTCTTGGTGTGATCTCATCCCATATTCACTGCATTAGGCCATTTGCCCAAGCTGGGGCTATACCTTTGTATGTGGAGCTGCTTCGGGGACATGATCCCATCGGTAAGGAGATTGCAGAGGATGTGTTCTGTGTCTTGGCTGTTGCAGAAGTGAATGCAGTTGCAATCACTGAACACTTGGTGGAAATCCTTCGAGAAAATGATGATGTAGCCAAGGCTGCAGCTGCTGATATATTGTGGGATCTCTCCAGTTACCATCATTCAGTGTCTTTCATTAGAAACTCTGGCGCAATTCCAATTTTTGTTCAGCTTTTGAGGGATAGAAGCAGTGAAGTTAGGGAGAAAGTATCAGGGGCCATTGCTCAATTGAGTTATAGTGCAGGAGACCGCGCAGCACTTGCTGAGGCAGGTGCAATTCCGGTCCTGATCGATTTGTTGGGCGATGAGTCAGAGGAGCTGAGAGAAAATGCTGCAGAAGCTCTCATCAGTTTTTCCGAAGACCCTTCACAGCGCGGCATAATGTCCGAAGCATTCAGAGTTACTTCATTCCAGGAAATGCAGAACAGACTGGTACAGATTCGAAGTTCTGATGAGTACATGGCCAGATCTTTGAGACAGATGAGCATGGAGCAGCTTCTTTGGGACCCAGACATGGTCTAA 1368 0.47 MSTSWEESFELFEKVVASGRNAMQIRAIIKLARLSNSAPAHVLTRTVPILTRLLGSSSSPSVQGASAYCLKCIAHQGDGDRMAILIGQYGAIPIALRLLQHSEGSFQRVLVKCLWSLVIFGKHNRVILVRNGGLEIIIRMLGSYTGRMRQYLLEILSALALLREVRRVIISLEGLRFLVQAVKFGGMASRERAAHAVGCLGVAKKARRVLVDLGAMHMLIELFREGDACTKLVAGNALGVISSHIHCIRPFAQAGAIPLYVELLRGHDPIGKEIAEDVFCVLAVAEVNAVAITEHLVEILRENDDVAKAAAADILWDLSSYHHSVSFIRNSGAIPIFVQLLRDRSSEVREKVSGAIAQLSYSAGDRAALAEAGAIPVLIDLLGDESEELRENAAEALISFSEDPSQRGIMSEAFRVTSFQEMQNRLVQIRSSDEYMARSLRQMSMEQLLWDPDMV* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0720 455 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 332 374 IPR000225 GO:0005515
Vvi19g0720 455 ProSiteProfiles HEAT repeat profile. 374 412 IPR021133 -
Vvi19g0720 455 SUPERFAMILY ARM repeat 149 410 IPR016024 -
Vvi19g0720 455 Gene3D - 285 422 IPR011989 -
Vvi19g0720 455 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 2 413 - -
Vvi19g0720 455 SMART arm_5 321 361 IPR000225 GO:0005515
Vvi19g0720 455 SMART arm_5 203 243 IPR000225 GO:0005515
Vvi19g0720 455 SMART arm_5 280 320 IPR000225 GO:0005515
Vvi19g0720 455 SMART arm_5 362 402 IPR000225 GO:0005515
Vvi19g0720 455 SMART arm_5 36 75 IPR000225 GO:0005515
Vvi19g0720 455 SMART arm_5 121 161 IPR000225 GO:0005515
Vvi19g0720 455 Gene3D - 14 284 IPR011989 -
Vvi19g0720 455 ProSiteProfiles HEAT repeat profile. 333 371 IPR021133 -
Vvi19g0720 455 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 373 407 IPR000225 GO:0005515
Vvi19g0720 455 Pfam HEAT repeats 294 397 - -
Vvi19g0720 455 SUPERFAMILY ARM repeat 26 160 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0720 Vvi-Chr19 7835197 7836564 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0720 164 403 U-box Gene Family AT2G23140 26.721 1.65e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0720 - - vvi:100248730 850.121