Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0718 ATGGCTGCTTTCTATCTCTACACGTTCAACCTCATTCCTCATTCTCACTCTCCTTCTGCTTCATCAAACCCTGATTCACTCTCGAATCTCAATTCCATCAGTGCAAAAATCGATAAAAGAAGAAGCAGTTGCAGAACCAGTGGGTTCACTGTGCTGTCTACGCACTCTAATCCTAGAATTCTCAAGTCCAATCGCAGGTCACGCTACGGACAAGTGCTCTCGCCTTACGATACTGATGACAATGCGGGGGATGAGGATGGAGATTGGTTCTTCGATGATGAAGATTCTGAGACAGAAGAGTTTGATGCTGATCGGAAAAAATTTAATTCACAGAAGGGGAATGATACAAGACAAGGTAGCCGGAGACAACTAGAAGAAGACCAGAGCATTAGATCATTAAAATCTGAAGGAAGTTTTAATATTTCCAAAGGAGAATTGGATGTCAAAAATGGGAAAAACACCATTGGGAGTTCTTATCATACTTTCAACAAATCAGAAGATTATGATTCATCAGAAATGCATGGGATAGGAAAGCTGAAGCCCAGGAAATCTACAGAGAACAAATACTGTCGATTATCAGAAGAAATAGATTTAGATGAGAAATGGTTTCCACTTCTTGATTACCTGAGCACTTTTGGACTTAAGGAATCGCATTTTATCCAAATGTATGAGAGGCACATGCCTTCCCTTCAGATTAATGCATGTTCTGCACAGGAAAGGTTGGAGTACTTGTCAAGTGTTGGTGTCAAACACAGAGACATCAAAAGAATTATTTTGAGGCAGCCACAAATTCTAGAGTATACAGTGGAGAACAATCTGAAGTCCCATGTTGCTTTTTTGGTGGGTTTGGGTATTCCAGATTCTAGAATAGGGCATGTAATTGCTGCTGCTCCATCTTTGTTTTCTTATAGTGTGGAGAATTCATTGAAACCCACAGTGAGGTACTTGATCGAAGAGGTTGGCATTAAGAAAAATGATTTAGGGAAAGTCGTGCAGTTAAGCCCTCAAATACTGGTTCAGAGGATTGACAATTCATGGAACACCCGCTATAGTTTTCTCTCAAGAGAATTGGGAGCTCCCAGAGATAGTATAGTGAAAATGGTTACTAAACATCCCCAGCTTCTTCATTACAGCATTGAGGATGGATTTCTGCCTAGGATAAATTTCCTGAGAAGTATTGGAATGCGTAATTCTGACATCTTGAAAGTTTTAACAAATCTTACACAGGTACTATCTCTATCACTGGAGGATAATCTAAAGCCTAAGTACATGTACTTGGTCAATGAACTTCGAAATGAGGTTCATTCCTTGACCAAATATCCTATGTATCTAAGCTTGTCTTTGGACCAGAGAATTCGTCCTCGCCATAGGTTCTTGGTTTACCTAAAGAAAGCCCCAAAGGGGCCATTTCCTCTGAGTTCATTTGTTCCAACTGATGAATGCTTTTGTCAGCAGTGGGCTGGGACTAGTCTTGATAGTTATTTGGCCTTTCGACAGAGATTACTACTCAAAGATTTTGCAAAGAAGTATGAGAAGCGAAGATAA 1545 0.4013 MAAFYLYTFNLIPHSHSPSASSNPDSLSNLNSISAKIDKRRSSCRTSGFTVLSTHSNPRILKSNRRSRYGQVLSPYDTDDNAGDEDGDWFFDDEDSETEEFDADRKKFNSQKGNDTRQGSRRQLEEDQSIRSLKSEGSFNISKGELDVKNGKNTIGSSYHTFNKSEDYDSSEMHGIGKLKPRKSTENKYCRLSEEIDLDEKWFPLLDYLSTFGLKESHFIQMYERHMPSLQINACSAQERLEYLSSVGVKHRDIKRIILRQPQILEYTVENNLKSHVAFLVGLGIPDSRIGHVIAAAPSLFSYSVENSLKPTVRYLIEEVGIKKNDLGKVVQLSPQILVQRIDNSWNTRYSFLSRELGAPRDSIVKMVTKHPQLLHYSIEDGFLPRINFLRSIGMRNSDILKVLTNLTQVLSLSLEDNLKPKYMYLVNELRNEVHSLTKYPMYLSLSLDQRIRPRHRFLVYLKKAPKGPFPLSSFVPTDECFCQQWAGTSLDSYLAFRQRLLLKDFAKKYEKRR* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0718 514 Gene3D Transcription termination factor 3, mitochondrial 264 501 IPR038538 -
Vvi19g0718 514 MobiDBLite consensus disorder prediction 79 99 - -
Vvi19g0718 514 MobiDBLite consensus disorder prediction 63 130 - -
Vvi19g0718 514 Pfam mTERF 206 281 IPR003690 GO:0003690|GO:0006355
Vvi19g0718 514 Pfam mTERF 269 461 IPR003690 GO:0003690|GO:0006355
Vvi19g0718 514 PANTHER CGI-12 PROTEIN-RELATED 201 485 IPR003690 GO:0003690|GO:0006355
Vvi19g0718 514 FunFam Transcription termination factor MTERF9, chloroplastic 266 501 - -
Vvi19g0718 514 SMART mt_12 401 433 IPR003690 GO:0003690|GO:0006355
Vvi19g0718 514 SMART mt_12 365 396 IPR003690 GO:0003690|GO:0006355
Vvi19g0718 514 SMART mt_12 291 323 IPR003690 GO:0003690|GO:0006355
Vvi19g0718 514 SMART mt_12 255 286 IPR003690 GO:0003690|GO:0006355
Vvi19g0718 514 SMART mt_12 328 360 IPR003690 GO:0003690|GO:0006355
Vvi19g0718 514 SMART mt_12 434 466 IPR003690 GO:0003690|GO:0006355
Vvi19g0718 514 MobiDBLite consensus disorder prediction 100 130 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vvi19g0718 mTERF 4.5e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0718 K15032 - vvi:100260706 974.926