Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0715 ATGCACTTCTCTGGCCCGACCTATTGTGAGCAATACGGCACCCATGAATCATCCTCAGCAACTGGTAGTTTCCCCATCTACAATTCTCCATCTACTGTGAGTTTCTCTCCTGAGGGCAGCCCTGCGTCGCAGCAGGATTCTCAAACATACCCATCAGACCAGCTTCATTCCCCTGAGAATGGACATGGCTCTCCAATAAGCGGATCCTGTCTGACAGATGATGTCAATGAGCTGAGACACAAGCTCAGGGAATTGGAAACTGCTATGCTGGGGCCTGATTCAGACATTCTTGATGTGCACGAAGTCATTCCACGTGAACTCAACAAAATTTCATTGGAGAGGGAGAAGTGGAAACAGATGATGGAGGTGATCTCCAGAGGAGACTTGAAGGAAGTCCTTGTTAGTTGTGCAAAAGCAGTAGCAGACAATGATATATTGAGGGCTGAATGGGGGATTTCGGAGCTACGTCAGATGGTATCGGTTTCTGGTGAGCCAATTCAGCGGTTAGGAGCTTACATGTTGGAAGGACTAGTTGCAAGGTTGGCTGCTTCAGGAAGCTCCATCTATAAAGCTCTAAGGTGCAAAGAGCCGGCAAGTGCTGAACTCCTCTCATACATGCACTTGCTCTTTGAAATCTGCCCATACTTCAAGTTTGGGCATATGTCTGGAAATGGGGCTATTGCCGAAGCAATGAAGGATGAAAGCAAAGTCCATATAATTGATTTTCAGATTTCACAGGGCGTCCAGTGGATCACCCTAATCCAGGCTCTTGCGGCTCGGCCTGGTGGACCACCACAGATCCGTATCACAGGTATTGACGATTCTACATCAGCTTATGCCAGAGGGGGAGGACCCAGTATTGTGGGACAGAGGCTATCTAGGTTTGCTGAGTCATGTAAAGTACCATTCGAGTTCCATGCTGCTACCATTTCTGGTTGTGAGGTTCAGCTCGAAGATCTTGAGCTTCGACCAGGAGAAGCACTGGCTGTGAATTTTGCATTCATACTGCACCACATGCCTGATGAGAGTGTTGACACTCAGAATCATCGTGACAGACTGTTGAGGCTGGTTAAAAGCTTGTCCCCCAAGGTGGTGACTCTTGTTGAGCAAGAATCCAACACCAATACTGCTCCATTCCTTTCCCGATTCATTGAGGCCATGAACTATTATTTAGCTGTTTTTGAGTCAATTGATGTAACTTTGCCAAGGGATCACAAGGAGCGGATCAATGCTGAGCAGCACTGTCTGGCCCGAGAAATTGTCAACATAATAGCATGTGAGGGGGCTGAGAGAGTGGAACGACATGAACTTCTGGGGAAGTGGAAGTCACGATTTCTTATGGCTGGTTTTACTCCCCACCCGCTAAGCTCCTATGTGAATGCCACCATCAAGACTCTGCTGCAGAATTACAGTGACAAGTATTCACTTGAAGAGAAAGATGGAGCTCTCTATCTTGGCTGGATGGACCGAGCTCTAGTTGCTGCTTGTGCATGGAGTTGA 1500 0.4767 MHFSGPTYCEQYGTHESSSATGSFPIYNSPSTVSFSPEGSPASQQDSQTYPSDQLHSPENGHGSPISGSCLTDDVNELRHKLRELETAMLGPDSDILDVHEVIPRELNKISLEREKWKQMMEVISRGDLKEVLVSCAKAVADNDILRAEWGISELRQMVSVSGEPIQRLGAYMLEGLVARLAASGSSIYKALRCKEPASAELLSYMHLLFEICPYFKFGHMSGNGAIAEAMKDESKVHIIDFQISQGVQWITLIQALAARPGGPPQIRITGIDDSTSAYARGGGPSIVGQRLSRFAESCKVPFEFHAATISGCEVQLEDLELRPGEALAVNFAFILHHMPDESVDTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFLSRFIEAMNYYLAVFESIDVTLPRDHKERINAEQHCLAREIVNIIACEGAERVERHELLGKWKSRFLMAGFTPHPLSSYVNATIKTLLQNYSDKYSLEEKDGALYLGWMDRALVAACAWS* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0715 499 MobiDBLite consensus disorder prediction 13 70 - -
Vvi19g0715 499 ProSiteProfiles GRAS family profile. 120 499 IPR005202 -
Vvi19g0715 499 Pfam GRAS domain family 129 498 IPR005202 -
Vvi19g0715 499 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 104 495 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0715 Vvi-Chr19 7772106 7773605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0715 68 498 GRAS Transcription Factor Family AT5G48150 72.120 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi19g0715 GRAS 6.1e-137 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0715 - - vvi:100250258 1002.28