Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0713 ATGATTCACGGATCTGTTGGCTCCAGTATGTTCTCGTCAACTTCTAATTGCTCCAATAGTAATACATTTGATGAAAGAAAATCTGGCTCCTTTGAGTTTAAACCCCACACTGTATCAAATTCTGCTTCAGGGTTATTCTTGGTGGGATCACCGGTTTCTGCAGATCTTAACCACCAGCAAGTTAAGCCCTTCATACCAGTTCAGGCCCAGCATCCAGATCTGTCATTAATGCCATCACCTACAGTTAAAAGTGAGATGATGGCACCCTCAAATGAATTGAGTCTATGTTCACCTGGGCATATGGTGACATCATTGGAAAGTGCACCTGCTGAAGTTGATTCTGATGAGCTAAACCAGCAAGGGCATCCCAATAATGGGGTCCAAGCATCACAATCTGATCAGAAAGGAATTGGGCCTTCGGCTGTAGTTGAGAGATCATCTGAGGATGGATATAATTGGAGAAAATATGGACAGAAACATGTTAAAGGAAGTGAATTTCCACGTAGCTATTACAAATGTACACATCCTAACTGTGAGGTAAAAAAGCTATTTGAACGTGCTCATGATGGACAGATAGTAGAGATCATCTATAAGGGTACGCATGATCATCCTAAACCTCAACCTAGTCGCCGATATGCTTCTGGTGCTATTTTACCTGTCCAAGAAGAAAGACCTGATAAAGTTTCATCTTTAATTGGTCGAGATGACAAGTCACCCAGCATATATGGCCAGATGGCCCACAACATCGACCCCAATGGCACTCCCGAACTATCGCCTGTTGCAGCAAATGATGATGTTGTAGAAGGTGCTATCCTTGATGAGGTTGATGAAGATGATCCATTGTCAAAGCGGAGGAAGATGGAAATTGGTGGGATTGATGTCACTCCTGTGGTTAAGCCTATCAGAGAACCGCGTGTTGTTGTTCAAACTCTGAGTGAGGTTGACATACTGGATGATGGGTATCGGTGGCGCAAATATGGGCAGAAAGTGGTGAGAGGCAACCCTAATCCGAGGAGTTATTACAAGTGCACGAATGCTGGATGCCCTGTTAGGAAGCATGTGGAGAGAGCATCCCATGATCCAAAAGCAGTGATAACCACATATGAAGGAAAACATAATCATGATGTACCAACTGCAAGGACTAATAGCCATGACGCAGCAGGACAAGTAGCTCTGAATGGAATGCCAATGATTAGATCAGAAGAAAATGACACAATCAGTCTTGATCTTGGGGTTGGGATAAACTCTGCTTCTGAGAATAGACCAAATGTACAGCATCAAACACTGCATGCTGAACTTGTTCTAACCCAAACCCGCACTAACAATTCCAATTTTCAGGCAGTTCAAGCAACCCCAGTTTCAAGATACTATGGTGTTCTAAACAATGGCATGGATCTGTATGGATTTAGAGAAAACCTGGGTGAAAGCCGGAGTTTTGAAACTCCACCTTTAAACCATTCCTCCAATCCATGTCCACAAAACATGGGGAGAATACTAATGGGCCCATGA 1509 0.4334 MIHGSVGSSMFSSTSNCSNSNTFDERKSGSFEFKPHTVSNSASGLFLVGSPVSADLNHQQVKPFIPVQAQHPDLSLMPSPTVKSEMMAPSNELSLCSPGHMVTSLESAPAEVDSDELNQQGHPNNGVQASQSDQKGIGPSAVVERSSEDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERAHDGQIVEIIYKGTHDHPKPQPSRRYASGAILPVQEERPDKVSSLIGRDDKSPSIYGQMAHNIDPNGTPELSPVAANDDVVEGAILDEVDEDDPLSKRRKMEIGGIDVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARTNSHDAAGQVALNGMPMIRSEENDTISLDLGVGINSASENRPNVQHQTLHAELVLTQTRTNNSNFQAVQATPVSRYYGVLNNGMDLYGFRENLGESRSFETPPLNHSSNPCPQNMGRILMGP* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0713 502 FunFam WRKY transcription factor 33 304 370 - -
Vvi19g0713 502 SUPERFAMILY WRKY DNA-binding domain 146 206 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi19g0713 502 ProSiteProfiles WRKY domain profile. 312 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g0713 502 MobiDBLite consensus disorder prediction 1 27 - -
Vvi19g0713 502 Pfam WRKY DNA -binding domain 148 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g0713 502 Pfam WRKY DNA -binding domain 318 374 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g0713 502 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 73 418 IPR044810 GO:0003700
Vvi19g0713 502 FunFam WRKY transcription factor 138 207 - -
Vvi19g0713 502 MobiDBLite consensus disorder prediction 1 26 - -
Vvi19g0713 502 MobiDBLite consensus disorder prediction 106 139 - -
Vvi19g0713 502 SUPERFAMILY WRKY DNA-binding domain 309 377 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi19g0713 502 MobiDBLite consensus disorder prediction 113 137 - -
Vvi19g0713 502 Gene3D WRKY domain 139 207 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi19g0713 502 Gene3D WRKY domain 302 378 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi19g0713 502 SMART WRKY_cls 147 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g0713 502 SMART WRKY_cls 317 376 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi19g0713 502 ProSiteProfiles WRKY domain profile. 148 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0713 Vvi-Chr19 7761846 7766999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0713 2 502 WRKY Transcription Factor Family AT4G26640 53.557 2.32e-164 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi19g0713 WRKY 1.2e-25 CL0274