Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0707 ATGGAATCAGATCTTGGGAAGCTCTTCATCGGTGGGATTTCATGGGACACAGATGAAGATCGTCTTAAGGAATATTTTAGAACATATGGAGAAGTGGTGGAGGCTGTGATAATGAGGGATCGTACAACTGGTCGTGCTCGTGGCTTTGGGTTTGTCGTCTTTGCGGATCCTGCTGTTGCTGAAAGGGTGGTTATGGATAAACATATGATTGATGGTCGAACTGTTGAAGCAAAGAAGGCTGTTCCTAGGGATGATCAGCACCTTCTGAACAGAAACACCGGTAGCATTCATGGATCTCCAGGTCCAGGACGTACTAAAAAGATTTTTGTTGGAGGTTTAGCATCCACCGTTACGGAGAGTGATTTTAAGAAGTACTTCGATCAATTTGGTACAATTAATGATGTTGTGGTGATGTATGATCATAACACCCAGAGGCCAAGGGGCTTTGGATTCATTACTTATGATTCTGAGGAAGCAGTGGAGAGAGTTTTACACAAAACCTTCCATGAACTTAATGGAAAAATGGTTGAAGTCAAGCGAGCAGTTCCAAAAGAACACTCACCAGGACCCAGCCGGAGCCCTTTGGTTGGATATAACTATGGTTTGGGTAGGAACAACAACTTCCTTAACAATTATGGTCAGGGATATAACATGAGTTCAGTTGGAAGCTATGGAATCAGGATGGATGGTAGATTTAATCCAGTTGCTAGTGGTCGAAGTGGGTTTCCTCCATTCGGTGCTCCAGGTTATGGAATGGGTATGAATTTGGAACAGGGGTTGAGCCCGAGCTACAGTGGGAATTCTAGTTTCAGTAACAATCCTGGATATGGACGGATATTGAACCCTTATTATAGTGGCAATTCAAACAGGTACAGTACTCCTATTGGGTATAATGCAGGTAATGGAAGAAGCGATTCCGTTTTAAACTCAACACCTCGGAATGTTTGGGGAAATGGGAGCCTTAACAATGCCACAAACCCTGCTAGTCCTGGTGCTTACTTGGGCTCTGGAGGTGGGAATTTTGGAGTCTCATTTGGAAATGGTGGGGCAAATTGGGGCTCTTCTCCTATTCCAGCTCAAGGTGGTGGGAGTGCTCTGGGCTTCACCAGTGGAAGTCTCAATTACGGGAGTGGAGATAGTAGCTATGGGTTGGGAGGGGGAGGGTATGGAAGAAACAGTAGCACAGGTGTAGCCGCAGCATCATCATTCGCCCCATCAACTGGGGGTTATGAAGGGTCTTATGAGGAGTTGTACCGCAGCGGTTCAGTTTATAATGATTCAACTTGGCGAACTCCCACATCTGAGCTAGATGGTCCTGGCTCGTTTAGTTATGGACTGGGCAATGCAGCTTCAGATGTTACTGCTAATAGTGCTGAGGATTACATTGGAAGTTATAGTGTTGCAAATAGACAATCAAATAGAGGAATTGCTGCCTAG 1437 0.4516 MESDLGKLFIGGISWDTDEDRLKEYFRTYGEVVEAVIMRDRTTGRARGFGFVVFADPAVAERVVMDKHMIDGRTVEAKKAVPRDDQHLLNRNTGSIHGSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEEAVERVLHKTFHELNGKMVEVKRAVPKEHSPGPSRSPLVGYNYGLGRNNNFLNNYGQGYNMSSVGSYGIRMDGRFNPVASGRSGFPPFGAPGYGMGMNLEQGLSPSYSGNSSFSNNPGYGRILNPYYSGNSNRYSTPIGYNAGNGRSDSVLNSTPRNVWGNGSLNNATNPASPGAYLGSGGGNFGVSFGNGGANWGSSPIPAQGGGSALGFTSGSLNYGSGDSSYGLGGGGYGRNSSTGVAAASSFAPSTGGYEGSYEELYRSGSVYNDSTWRTPTSELDGPGSFSYGLGNAASDVTANSAEDYIGSYSVANRQSNRGIAA* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0707 478 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Vvi19g0707 478 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Vvi19g0707 478 Gene3D - 103 190 IPR012677 -
Vvi19g0707 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Vvi19g0707 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Vvi19g0707 478 SUPERFAMILY RNA-binding domain, RBD 102 206 IPR035979 GO:0003676
Vvi19g0707 478 Gene3D - 6 87 IPR012677 -
Vvi19g0707 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Vvi19g0707 478 CDD RRM2_Hrp1p 107 184 - -
Vvi19g0707 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Vvi19g0707 478 SMART rrm1_1 7 78 IPR000504 GO:0003723
Vvi19g0707 478 SMART rrm1_1 107 179 IPR000504 GO:0003723
Vvi19g0707 478 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 474 - -
Vvi19g0707 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Vvi19g0707 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0707 Vvi-Chr19 7717386 7720838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0707 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 24.719 1.32e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0707 K14411 - vvi:100267443 922.924