Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0699 ATGGGTATTTCTCGAGATTCCATGCACAAGAGGCGTGCCACTGGAGGCAAGAAGAAGGCGTGGAGGAAGAAGAGAAAGTACGAGCTTGGGAGACAACCTGCTAGCACAAAACTATCCAGCAACAAAACAGTTCGGAGAGTTAGAGTGAGAGGTGGGAATGTGAAATGGCGTGCACTGAGGCTTGACACTGGGAACTACTCTTGGGGCAGTGAGGCTGTGACCAGGAAAACTCGAATCTTGGATGTGGTTTACAATGCATCAAACAATGAGTTAGTTCGTACCCAAACATTGGTGAAGAGTGCCATTATTCAGGTTGATGCAGCACCATTTAAGCAGTGGTATCTTCAACACTATGGCCTTGACATTGGTCGCAAGAAGAAAGCCTCAGCCACTGCCAAGAAAGAAGGAGAGGAAGGTGATGGTCCTGCTGAGGAGACAAAGAAGAGCAACCATGTGGTGAGAAAATTAGAGAAGCGTCAACAGGAGCACAAACTTGACCCACATATCGAAGAGCAATTTGGTAGTGGCCGGTTGTTGGCTGCAATCTCATCCCGTCCTGGTCAGTGTGGCCGTGCTGATGGATACATCTTGGAAGGCAAGGAGCTTGAGTTCTACATGAAGAAGATCCAGAGGAAGAAGGGGAAGGGCTCAGCTGCTTAA 660 0.4848 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPASTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFKQWYLQHYGLDIGRKKKASATAKKEGEEGDGPAEETKKSNHVVRKLEKRQQEHKLDPHIEEQFGSGRLLAAISSRPGQCGRADGYILEGKELEFYMKKIQRKKGKGSAA* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0699 219 FunFam 40S ribosomal protein S8 32 161 - -
Vvi19g0699 219 MobiDBLite consensus disorder prediction 1 42 - -
Vvi19g0699 219 Gene3D - 32 161 - -
Vvi19g0699 219 Gene3D - 162 215 - -
Vvi19g0699 219 MobiDBLite consensus disorder prediction 11 26 - -
Vvi19g0699 219 CDD Ribosomal_S8e_like 5 197 - -
Vvi19g0699 219 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Vvi19g0699 219 PANTHER 40S RIBOSOMAL PROTEIN S8 1 215 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vvi19g0699 219 NCBIfam ribosomal protein eS8 1 199 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vvi19g0699 219 Pfam Ribosomal protein S8e 5 197 IPR022309 -
Vvi19g0699 219 MobiDBLite consensus disorder prediction 131 152 - -
Vvi19g0699 219 FunFam 40S ribosomal protein S8 162 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0699 Vvi-Chr19 7660194 7663246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0699 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 82.039 4.54e-123 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0699 K02995 - vvi:100257178 426.017