Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0692 ATGTCAGCTTCTGGGTTTGCTATGAACATCGCGGGGGACCACGCCCAGGTCGTCCTGATTTCAGTTTTCGTGGCTGTTCTCTGCCTATGTTTGGTCATCGGTCACTTGCTCGAAGAAAATCGATGGCTCAATGAATCCACCACTGCTATTATCATCGGATGCATAACGGGAACCATAATCTTGTTGTTGAGCAAAGGGAAAAGCTCTCACATCCTAAGGTTTAATGAAGAACTGTTCTTCATATATCTCCTCCCACCCATAATATTCAATGCCGGGTTTCAGGTCAAGAAGAAACAGTTCTTCCAAAACTTCATAACCATTATGCTGTTTGGAGTGATAGGTGTTTTTATATCCTCATCCATTATTACAGCTGGAGCCTGGTGGCTGTTTCCTCGGTTTGGATTTACCGGTCTGAGTGCACAAGACTATCTTGCTATAGGAACAATTTTTTCATCAACAGATACAGTGTGTACACTGCAGGTTCTGCATCAAGATGAGACTCCTTTACTATACAGCCTAGTCTTCGGAGAAGGAGTTGTGAATGACGCAACATCGGTTGTTCTGTTCAATGCAGTTCAAAAGCTTGATAAGAGCAAACTTAATGGGTGGGCAGCACTTCGAGTGCTTCTGGATTCCTTATACCTGTTTTCAACAAGCACTGCTCTTGGAGTCGTTGCTGGGCTTTTGACAGCATATACCCTTAAAACCTTGTATATTGGAAGACATTCAACTGTTCGTGAAATTGCTTTAATGGTTTTAATGGCATATCTGTCCTACACGTTGGCTGAGTTGTTTCACCTAAGTGGGATCCTCACCGTCTTCTTCTGTGGGATTCTCATGTCACACTATGCATCGCATAATGTGACTCAAAGTTCAAGAATCACAACCAGGCATATATTTGCAACAATGTCATTTATTGCAGAAACATTCATATTTCTTTATGTGGGAATCGATGCTTTGGACATTGAGAAGTGGAAGCTCAGCAAGTTAAGTTTCAGGACTTCGGTGGGCATCTATAGTACTGTAGTTTTACTAATCTCGCTTGGCCGTGCTGCATTTGTATTTCCTCTGTCCACCTTCTCCAATTATGTGCATAGACGTGCTGATAGATTGTCATCAATTTCGTTCAAACACCAGGTAATAATTTGGTGGGCTGGGCTCATGAGAGGAGCTGTTTCTATTGCTCTAGCATTCAAACAGTTCACATACTCGGGGGTTACCTTGGATCCAGCTAATGCTACAATGGTTACTACCACCATAATAGTCGTGCTCTTCACAACGCTGGTGTTTGGTTTTCTGACAAAGCCGCTTATAAGTTTTCTGCAACCTCACCATACAAATAACAATACCAGCCATGGGGAACCAAGATCACCCAAAGAGGACCTCAGCCTGCCTTTGCTATCCTTAGAAGAATCTGCTGAGACTAACATCCTTCGAGCAAAGGAGAGTTTGTCCATGCTAATAGAAAGGCCAGTATACACCATACATAACTACTGGAGGAAGTTCGATGATACGTACATGAGACCAGTATTTGGTGGGCCGTGTAGAGATCAGTCTGCCTGCTAG 1566 0.4317 MSASGFAMNIAGDHAQVVLISVFVAVLCLCLVIGHLLEENRWLNESTTAIIIGCITGTIILLLSKGKSSHILRFNEELFFIYLLPPIIFNAGFQVKKKQFFQNFITIMLFGVIGVFISSSIITAGAWWLFPRFGFTGLSAQDYLAIGTIFSSTDTVCTLQVLHQDETPLLYSLVFGEGVVNDATSVVLFNAVQKLDKSKLNGWAALRVLLDSLYLFSTSTALGVVAGLLTAYTLKTLYIGRHSTVREIALMVLMAYLSYTLAELFHLSGILTVFFCGILMSHYASHNVTQSSRITTRHIFATMSFIAETFIFLYVGIDALDIEKWKLSKLSFRTSVGIYSTVVLLISLGRAAFVFPLSTFSNYVHRRADRLSSISFKHQVIIWWAGLMRGAVSIALAFKQFTYSGVTLDPANATMVTTTIIVVLFTTLVFGFLTKPLISFLQPHHTNNNTSHGEPRSPKEDLSLPLLSLEESAETNILRAKESLSMLIERPVYTIHNYWRKFDDTYMRPVFGGPCRDQSAC* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0692 521 Pfam Sodium/hydrogen exchanger family 21 438 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vvi19g0692 521 NCBIfam sodium/hydrogen exchanger 3 18 455 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vvi19g0692 521 PRINTS Na+/H+ exchanger signature 92 106 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vvi19g0692 521 PRINTS Na+/H+ exchanger signature 78 89 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vvi19g0692 521 PRINTS Na+/H+ exchanger signature 147 157 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vvi19g0692 521 PRINTS Na+/H+ exchanger signature 107 115 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vvi19g0692 521 PANTHER SODIUM/HYDROGEN EXCHANGER 13 511 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vvi19g0692 521 Gene3D - 10 448 IPR038770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0692 Vvi-Chr19 7519248 7525059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0692 9 521 Antiporters AT5G55470 73.745 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0692 - - vvi:100258969 986.482