Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0674 ATGTGGCTTATCAAGTGGTGGATTATGATCAATGTGACACTAAAAGTAACAACTGGTGGAAAAATATGTGGTGACATTCATGGGCAGTTCTATGACATGAAAGAGCTTTTCAAAGTAGGAGGTGATTGTCCAAAGACAAACTACTTGTTTCTTGGAGATTTTGTTGACAGAGGTTTTTACTCTGTTGAAACATTTCTGCTTCTGCTAGCTCTGAAGGTGAGATATCCAGATCGAATAACGCTTATTAGAGGAAACCATGAGAGTCGTCAGATCACACAGGTATACGGATTCTATGACGAGTGTCTGCGTAAATATGGTTCTGTGAATGTTTGGAGATACTGCACCGATATATTTGATTACTTAAGCCTGTCGGCCCTCATTGAGAACAGGATTTTTAGTGTCCATGGTGGTCTCTCTCCTGCCATATCCACACTCGACCAGATCCGAACAATAGATCGGAAGCAAGAAGTACCCCATGACGGTGCCATGTGTGACCTCCTATGGTCAGATCCCGAAGACATTGTAGAGGGTTGGGGATTGAGTCCCCGGGGTGCTGGTTACTTATTTGGTGGCAGTGTTGTCGCTTCTTTTAACCATGAGAATAATATTGATTATATATGTCGTGCCCATCAATTGGTAATGGAAGGATACAAGTGGATGTTCAAGAATCAAATCGTTACCGTCTGGTCAGCCCCAAATTATTGTTACAGATGTGGTAATGTAGCTGCAATTCTTGAGCTGGATGAGAATCTTAATAAGGAGTTCCGGGTGTTTGAAGCAGCTCCACAAGAATCAAGAGGAGCTCCTGCTAAAAAACCTGCACCAGATTATTTTCTCTGA 840 0.4238 MWLIKWWIMINVTLKVTTGGKICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENRIFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLLWSDPEDIVEGWGLSPRGAGYLFGGSVVASFNHENNIDYICRAHQLVMEGYKWMFKNQIVTVWSAPNYCYRCGNVAAILELDENLNKEFRVFEAAPQESRGAPAKKPAPDYFL* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0674 279 CDD MPP_PP2A_PP4_PP6 10 262 - -
Vvi19g0674 279 FunFam Serine/threonine-protein phosphatase 73 272 - -
Vvi19g0674 279 Gene3D - 10 279 IPR029052 -
Vvi19g0674 279 SMART pp2a_7 8 262 IPR006186 GO:0016787
Vvi19g0674 279 SUPERFAMILY Metallo-dependent phosphatases 21 265 IPR029052 -
Vvi19g0674 279 ProSitePatterns Serine/threonine specific protein phosphatases signature. 82 87 IPR006186 GO:0016787
Vvi19g0674 279 Pfam Calcineurin-like phosphoesterase 22 211 IPR004843 GO:0016787
Vvi19g0674 279 PRINTS Serine/threonine phosphatase family signature 145 172 IPR006186 GO:0016787
Vvi19g0674 279 PRINTS Serine/threonine phosphatase family signature 224 240 IPR006186 GO:0016787
Vvi19g0674 279 PRINTS Serine/threonine phosphatase family signature 81 105 IPR006186 GO:0016787
Vvi19g0674 279 PRINTS Serine/threonine phosphatase family signature 19 46 IPR006186 GO:0016787
Vvi19g0674 279 PRINTS Serine/threonine phosphatase family signature 202 222 IPR006186 GO:0016787
Vvi19g0674 279 PRINTS Serine/threonine phosphatase family signature 48 75 IPR006186 GO:0016787
Vvi19g0674 279 PRINTS Serine/threonine phosphatase family signature 116 142 IPR006186 GO:0016787
Vvi19g0674 279 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 15 279 IPR047129 GO:0004722
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0674 Vvi-Chr19 7349839 7364274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0674 22 197 Calmodulin-binding Proteins AT5G63870 38.498 2.33e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0674 K15423 - vvi:100245244 544.658