Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0672 ATGGATCCAACGGCGAGCTCTGAGGTGGAGGCGAGATCCAAGCGCCCGGCGGAGGACGATGGAGAGACGGCCAGGAAGCGGCCCAGGGGCGGGGATGTCAAGAGAGTGGCGGAGATTGTGCTGGTGCTCTCCGCTATGGCGGCCGTCCGCGGCGGCCGGAGTCCTACGGCAGAGGAGAGGGCTATGATGGAGGAGGCCAGGGCGAAGGTGGTGGCCATGTGCGAGGGGTTGGCGCCCAAGGACATTGTGCCCAGGGAGGTGATCGGAGGGATGATTGAGGATCTTGGGATTAGTGGTAGGGAACAGAAGCTAGGGTTTCGGCCTCCCAAGATGTCGATTGCGGAGAAGTTGTTGCTTACCAAGCGGAAGATGGAAGAATCCAAGGAATTTGTGGCCCATTCTGCTACATATTCATCTCAACGGTTGCAATCAACCTTTGGTTCTCCAACTGAAAGCCGTGGGCCCCAACATACTGCGCGTATGTTTCCATCAGATAAACCCGGTCATCCTCCAATTTCTTCTGGAGGTTTTCAACCTGCTTCACCTTTAGGGAATGTTTCCGCAGCAACTACTACTCCTTTACCATATCAGTTGCCCCCCAATGAAGTAAGGTCATCTATAGCTTCAAGTGGATTAGCAACCAGCAATTTGGGAAGGGATTCTTCTTCTTCTTTATCATTGCCCAGAGTTGAAAGAACACATTTCAGATTGGATGGAAGGCCAAATGGGTCTCCTTATCCATCTCAAGTACAAGCAAACTCTTCTGTTGATCACTTTCCGGCAAAAACTCCAACCTGGTCCTTACAACCACAATCTGTTTCATCAGTGAAAACTGGGCCAGAGAACAAGGTGCAGGATCATATTGCTGCTAGGGTTGAGGGGGCTGCTGATATTAGTTCGTCAAGAATGGCTCCTCAATCAACAAGAGATCAGAACTCTAGATCATTTGTTACTCATACTACACCTGGACATTTGCAAAGCACACAGCAGCTGTTACTGGGCAACAACTTTCAACCGTCTTCCCTTTCCAGTAATCACAATGAAATTGGTAAAATTGTTCAGAAGTTATTACATCCACAGCTTCCTCAGCATCCCACATGGAATCCTCCTTCAAGGGATTACATGAATAAGGCTGTGACTTGCCAGATATGCAAGCTCACCATTAATGAGGTGGAAAACGTACTTCTTTGTGATGCATGTGAAAGAGGATTTCATTTAAAATGCCTTCAGTCATACAATCACAAAGGAATTCCTAGAGGCGAGTGGCATTGCCCAAAGTGCTTGTCGCTGAGTAGTGGGAAGCCTTTGCCCCCTAAATATGGTCGTGTTATGAGAAATATGAACACACCAAAAGGGCCTATTAGTGCAGCTGGAGTGCAGCCATCTTCAGAGAAGAAAGTTGGGATTCTGGATCAACAGAAGATAACAGAAAATGGAAATTCTGATTTACAGGGTCATAATGGTTCCCTGGTAAACAACCATATTGAGTTGGCATCTGATTCAAAGACATTGAATGCAAGTCAAGTGCAAGTGAATAATTCCTCATCAAGTATCAAAAATGTGGATGACAAGCCTTCTTCTGGAACTTACCCTAATAACTCAATCAAGTCCTTGGGGGCAGCTTGTGGTTCTCTATCTATTGCCTCATCAAATGAGACATCTACTCAACACAGTAAAATTTCTGAATCATCCTCACGTGAAGAGAGACTGGTTCCTAAACCAGATCCACAGCCCCCCAAATTATCTGATGCGATTAGTGATATGTCCCATCATTTACAAGTCTCACATAACCCACAAGATGTTGACAGTACTAGGCTGACAAACTGTGCTGAAATTCCATCAAAGAATTATCATGACAACAACACTATGGTTAAAGACTCAGAAAAAACTTATACAAGAGGAACTTCTGATTGTAACCTAACATATGATATTAAGCGAGATGACCAAGATGTTGCACAGGCAAGTTCTGTTGGAACTTCTGGGACTAGTGCAGGGGCTAAAGAGCCTACTGGATTTTCTCCAGATGGATTGCATGATGTTCAATGGATTGGCGACGTACTTAGAGTTGTAGAGGAGAAGACATTTTACCAGTCTTGTTGCATCAATGGAGTATCATATAAAGTGCTGGATCATGCTCTCTTTCATTCCAGCAATGACAAATTGATACCATTTAAGCTTCAGGGCATGTGGGAGGATAGCAAGACTAGGTCAAAATGGGTGATGGCCAATCAATGCTACTTTCCTAGTGACTTGCCAGAGGTTGTTGGTCGCCCGAGTGCTCCGGAAAGCAATGAGGTCTATGAATCTAATCACGATAGTGCCATAACGGCTGGCTTGATTCAAGGTCCATGTGAAGTTCTTCCTCCAGACAAGTTTAAGGAAGAAAGTGAAAGAAGAACACTTTTAGGGACTGAGGCAAATGATGGATTATGGCCGATCTTCCTATGCAAATGGTTCTATGATAAATTCAATGGGCTTTTCCAACCTTTTTTCAGTTGA 2499 0.4526 MDPTASSEVEARSKRPAEDDGETARKRPRGGDVKRVAEIVLVLSAMAAVRGGRSPTAEERAMMEEARAKVVAMCEGLAPKDIVPREVIGGMIEDLGISGREQKLGFRPPKMSIAEKLLLTKRKMEESKEFVAHSATYSSQRLQSTFGSPTESRGPQHTARMFPSDKPGHPPISSGGFQPASPLGNVSAATTTPLPYQLPPNEVRSSIASSGLATSNLGRDSSSSLSLPRVERTHFRLDGRPNGSPYPSQVQANSSVDHFPAKTPTWSLQPQSVSSVKTGPENKVQDHIAARVEGAADISSSRMAPQSTRDQNSRSFVTHTTPGHLQSTQQLLLGNNFQPSSLSSNHNEIGKIVQKLLHPQLPQHPTWNPPSRDYMNKAVTCQICKLTINEVENVLLCDACERGFHLKCLQSYNHKGIPRGEWHCPKCLSLSSGKPLPPKYGRVMRNMNTPKGPISAAGVQPSSEKKVGILDQQKITENGNSDLQGHNGSLVNNHIELASDSKTLNASQVQVNNSSSSIKNVDDKPSSGTYPNNSIKSLGAACGSLSIASSNETSTQHSKISESSSREERLVPKPDPQPPKLSDAISDMSHHLQVSHNPQDVDSTRLTNCAEIPSKNYHDNNTMVKDSEKTYTRGTSDCNLTYDIKRDDQDVAQASSVGTSGTSAGAKEPTGFSPDGLHDVQWIGDVLRVVEEKTFYQSCCINGVSYKVLDHALFHSSNDKLIPFKLQGMWEDSKTRSKWVMANQCYFPSDLPEVVGRPSAPESNEVYESNHDSAITAGLIQGPCEVLPPDKFKEESERRTLLGTEANDGLWPIFLCKWFYDKFNGLFQPFFS* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0672 832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 311 435 IPR013083 -
Vvi19g0672 832 MobiDBLite consensus disorder prediction 178 229 - -
Vvi19g0672 832 MobiDBLite consensus disorder prediction 549 603 - -
Vvi19g0672 832 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 8 830 - -
Vvi19g0672 832 ProSiteProfiles BAH domain profile. 704 831 IPR001025 GO:0003682
Vvi19g0672 832 Pfam PHD-finger 381 428 IPR019787 -
Vvi19g0672 832 Gene3D - 683 831 IPR043151 -
Vvi19g0672 832 MobiDBLite consensus disorder prediction 511 533 - -
Vvi19g0672 832 MobiDBLite consensus disorder prediction 244 260 - -
Vvi19g0672 832 ProSiteProfiles Zinc finger PHD-type profile. 378 430 IPR019787 -
Vvi19g0672 832 SUPERFAMILY FYVE/PHD zinc finger 371 437 IPR011011 -
Vvi19g0672 832 SMART PHD_3 380 428 IPR001965 -
Vvi19g0672 832 CDD BAH 703 821 - -
Vvi19g0672 832 MobiDBLite consensus disorder prediction 132 157 - -
Vvi19g0672 832 ProSiteProfiles Zinc finger RING-type profile. 381 427 IPR001841 -
Vvi19g0672 832 MobiDBLite consensus disorder prediction 294 325 - -
Vvi19g0672 832 MobiDBLite consensus disorder prediction 132 260 - -
Vvi19g0672 832 MobiDBLite consensus disorder prediction 7 31 - -
Vvi19g0672 832 MobiDBLite consensus disorder prediction 588 603 - -
Vvi19g0672 832 MobiDBLite consensus disorder prediction 1 31 - -
Vvi19g0672 832 CDD PHD_SF 380 427 - -
Vvi19g0672 832 MobiDBLite consensus disorder prediction 652 667 - -
Vvi19g0672 832 MobiDBLite consensus disorder prediction 651 673 - -
Vvi19g0672 832 MobiDBLite consensus disorder prediction 300 325 - -
Vvi19g0672 832 ProSitePatterns Zinc finger PHD-type signature. 381 427 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0672 Vvi-Chr19 7323009 7338314 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0672 381 427 PHD Transcription Factor Family AT2G36720 44.681 8.12e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi19g0672 PHD 8.8e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0672 - - vvi:104877603 1634.39