Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0656 ATGGAGGGTACATTACTCTATTTTAAAAACGATAAGTTTTGTTACGTTATAAGTTCCAAACCCTCGAGCCCTCTCTCTTTTCTCCATCACAGAACAAGCAATATGCGGAGAGGGAGGGCGGCTCCGACGGCTACACTGGCAACGTCGGCGGCAGGGGGGGCCGGTGGATCTGGGTTCGTCAAAGATATGAGGTATCGGGGTGTGAGGAAGAGGCCATGGGGGAGGTTTGCGGCAGAGATAAGAGACCCGTGGAAGAAGACAAGGGTTTGGTTGGGGACGTTCGACTCGCCGGAGGAGGCGGCAAGGGCGTACGACGCGGCTGCGAGGACTCTCCGGGGGCCCAAGGCAAAAACAAACTTTCCGGCGGTGTCGGGGGCGGCGGTGGCGGTGCCGGCGTTCGATCGGAACCTTAACGGTCAGTTCGGTGACGGCCACCACAACCGGGTGTACCGAGCGGATCAGTTTCAGGAGCAGCAGATTCACGCCCAGAGGCCGACGTCGAGTGGCATGAGCAGCACCGTGGAGTCCTTTAGCGGCCCTCGCCCAGCTCCGGCAAATCTACCTCCGGCGACGTTGCGCCGGCACCCACGTAGCCCTCCGCTTCTACCCGACGATTGCCACAGTGACTGCGACTCGTCGTCCTCGGTGATCGACAACGGAGACATCGCTGCTGCAACTTCAGTTCGAAAACCCCTCCCTTTCGATCTCAATGTTATGCCGTCCGACGATGACGAGCTCATCATGGGTGATCTCCACAGCACGGCTTTGCGTCTCTGA 777 0.5907 MEGTLLYFKNDKFCYVISSKPSSPLSFLHHRTSNMRRGRAAPTATLATSAAGGAGGSGFVKDMRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSPEEAARAYDAAARTLRGPKAKTNFPAVSGAAVAVPAFDRNLNGQFGDGHHNRVYRADQFQEQQIHAQRPTSSGMSSTVESFSGPRPAPANLPPATLRRHPRSPPLLPDDCHSDCDSSSSVIDNGDIAAATSVRKPLPFDLNVMPSDDDELIMGDLHSTALRL* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0656 258 CDD AP2 64 123 IPR001471 GO:0003700|GO:0006355
Vvi19g0656 258 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Vvi19g0656 258 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Vvi19g0656 258 MobiDBLite consensus disorder prediction 182 196 - -
Vvi19g0656 258 Gene3D AP2/ERF domain 63 123 IPR036955 GO:0003700|GO:0006355
Vvi19g0656 258 FunFam Ethylene-responsive transcription factor 2 63 122 - -
Vvi19g0656 258 MobiDBLite consensus disorder prediction 158 179 - -
Vvi19g0656 258 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 36 239 - -
Vvi19g0656 258 Pfam AP2 domain 64 113 IPR001471 GO:0003700|GO:0006355
Vvi19g0656 258 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Vvi19g0656 258 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Vvi19g0656 258 MobiDBLite consensus disorder prediction 158 213 - -
Vvi19g0656 258 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0656 Vvi-Chr19 7162172 7170400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0656 35 258 AP2-EREBP Transcription Factor Family AT1G50640 55.274 9.64e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi19g0656 AP2 3.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g0656 K09286 - vvi:100264172 398.667