Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi19g0656 | ATGGAGGGTACATTACTCTATTTTAAAAACGATAAGTTTTGTTACGTTATAAGTTCCAAACCCTCGAGCCCTCTCTCTTTTCTCCATCACAGAACAAGCAATATGCGGAGAGGGAGGGCGGCTCCGACGGCTACACTGGCAACGTCGGCGGCAGGGGGGGCCGGTGGATCTGGGTTCGTCAAAGATATGAGGTATCGGGGTGTGAGGAAGAGGCCATGGGGGAGGTTTGCGGCAGAGATAAGAGACCCGTGGAAGAAGACAAGGGTTTGGTTGGGGACGTTCGACTCGCCGGAGGAGGCGGCAAGGGCGTACGACGCGGCTGCGAGGACTCTCCGGGGGCCCAAGGCAAAAACAAACTTTCCGGCGGTGTCGGGGGCGGCGGTGGCGGTGCCGGCGTTCGATCGGAACCTTAACGGTCAGTTCGGTGACGGCCACCACAACCGGGTGTACCGAGCGGATCAGTTTCAGGAGCAGCAGATTCACGCCCAGAGGCCGACGTCGAGTGGCATGAGCAGCACCGTGGAGTCCTTTAGCGGCCCTCGCCCAGCTCCGGCAAATCTACCTCCGGCGACGTTGCGCCGGCACCCACGTAGCCCTCCGCTTCTACCCGACGATTGCCACAGTGACTGCGACTCGTCGTCCTCGGTGATCGACAACGGAGACATCGCTGCTGCAACTTCAGTTCGAAAACCCCTCCCTTTCGATCTCAATGTTATGCCGTCCGACGATGACGAGCTCATCATGGGTGATCTCCACAGCACGGCTTTGCGTCTCTGA | 777 | 0.5907 | MEGTLLYFKNDKFCYVISSKPSSPLSFLHHRTSNMRRGRAAPTATLATSAAGGAGGSGFVKDMRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSPEEAARAYDAAARTLRGPKAKTNFPAVSGAAVAVPAFDRNLNGQFGDGHHNRVYRADQFQEQQIHAQRPTSSGMSSTVESFSGPRPAPANLPPATLRRHPRSPPLLPDDCHSDCDSSSSVIDNGDIAAATSVRKPLPFDLNVMPSDDDELIMGDLHSTALRL* | 259 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi19g0656 | 258 | CDD | AP2 | 64 | 123 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi19g0656 | 258 | PRINTS | Ethylene responsive element binding protein signature | 87 | 103 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi19g0656 | 258 | PRINTS | Ethylene responsive element binding protein signature | 65 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi19g0656 | 258 | MobiDBLite | consensus disorder prediction | 182 | 196 | - | - | |
Vvi19g0656 | 258 | Gene3D | AP2/ERF domain | 63 | 123 | IPR036955 | GO:0003700|GO:0006355 | |
Vvi19g0656 | 258 | FunFam | Ethylene-responsive transcription factor 2 | 63 | 122 | - | - | |
Vvi19g0656 | 258 | MobiDBLite | consensus disorder prediction | 158 | 179 | - | - | |
Vvi19g0656 | 258 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 36 | 239 | - | - | |
Vvi19g0656 | 258 | Pfam | AP2 domain | 64 | 113 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi19g0656 | 258 | ProSiteProfiles | AP2/ERF domain profile. | 64 | 121 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi19g0656 | 258 | SMART | rav1_2 | 64 | 127 | IPR001471 | GO:0003700|GO:0006355 | |
Vvi19g0656 | 258 | MobiDBLite | consensus disorder prediction | 158 | 213 | - | - | |
Vvi19g0656 | 258 | SUPERFAMILY | DNA-binding domain | 64 | 121 | IPR016177 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi19g0656 | Vvi-Chr19 | 7162172 | 7170400 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi19g0656 | 35 | 258 | AP2-EREBP Transcription Factor Family | AT1G50640 | 55.274 | 9.64e-53 | 169 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Vvi19g0656 | AP2 | 3.5e-15 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi19g0656 | K09286 | - | vvi:100264172 | 398.667 |